Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_A02
(274 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr... 102 8e-24
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i... 86 1e-18
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans... 76 1e-15
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr... 61 2e-11
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans... 56 7e-10
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 46 1e-06
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 40 5e-05
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 40 6e-05
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 33 0.010
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa... 25 1.9
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 1.9
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces... 25 2.5
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 25 2.5
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 25 2.5
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 24 3.4
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 24 3.4
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 24 4.4
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 23 5.9
>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 102 bits (245), Expect = 8e-24
Identities = 46/59 (77%), Positives = 49/59 (83%)
Frame = +1
Query: 97 FFDVTADGSPLGRIVVELRTDVTPKTCENFRALCTGEKGFGYKGSTFHRVIPNFMLQGG 273
FFDV A+G PLGRIV +L DV PKT NFRALCTGEKG+GY GSTFHRVIP FMLQGG
Sbjct: 5 FFDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKGYGYAGSTFHRVIPQFMLQGG 63
>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 85.8 bits (203), Expect = 1e-18
Identities = 40/70 (57%), Positives = 48/70 (68%)
Frame = +1
Query: 64 ANKLKCLCREVFFDVTADGSPLGRIVVELRTDVTPKTCENFRALCTGEKGFGYKGSTFHR 243
AN+ + V+FD+ LGR+ + L PKT ENFRAL TGEKGFGY+GS FHR
Sbjct: 19 ANRGPKVTDTVYFDLQQGDEFLGRVTIGLFGKTVPKTAENFRALATGEKGFGYEGSIFHR 78
Query: 244 VIPNFMLQGG 273
VIPNFM+QGG
Sbjct: 79 VIPNFMIQGG 88
>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 75.8 bits (178), Expect = 1e-15
Identities = 36/66 (54%), Positives = 42/66 (63%), Gaps = 6/66 (9%)
Frame = +1
Query: 94 VFFDVTADGSPLGRIVVELRTDVTPKTCENFRALCTGE------KGFGYKGSTFHRVIPN 255
VF D+ DG LGRI + L + + PKT ENFR CTGE K GYK STFHR+I
Sbjct: 7 VFMDIAIDGRLLGRIKIRLFSSIVPKTAENFRQFCTGETLGVNQKPIGYKNSTFHRIIQG 66
Query: 256 FMLQGG 273
FM+QGG
Sbjct: 67 FMIQGG 72
>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 61.3 bits (142), Expect = 2e-11
Identities = 32/63 (50%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Frame = +1
Query: 97 FFDVTADGSPLGRIVVELRTDVTPKTCENFRALCTGEKGFG----YKGSTFHRVIPNFML 264
+F ++ DG I EL +V PKT +NF +LC G + G YKGS FHRVI NFML
Sbjct: 6 YFKISIDGKIQPTIYFELFDNVVPKTVKNFASLCNGFEKDGRCLTYKGSRFHRVIKNFML 65
Query: 265 QGG 273
QGG
Sbjct: 66 QGG 68
>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 56.4 bits (130), Expect = 7e-10
Identities = 26/49 (53%), Positives = 37/49 (75%)
Frame = +1
Query: 127 LGRIVVELRTDVTPKTCENFRALCTGEKGFGYKGSTFHRVIPNFMLQGG 273
LG+I++EL T+ PKTC+NF L ++G+ Y G FHRVIP+F++QGG
Sbjct: 10 LGKILIELYTEHAPKTCQNFYTL--AKEGY-YDGVIFHRVIPDFVIQGG 55
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 45.6 bits (103), Expect = 1e-06
Identities = 22/48 (45%), Positives = 29/48 (60%)
Frame = +1
Query: 130 GRIVVELRTDVTPKTCENFRALCTGEKGFGYKGSTFHRVIPNFMLQGG 273
G I +EL PK C NF LC +G+ Y G+ HRV+P F++QGG
Sbjct: 22 GDIQIELWCKEVPKACRNFIQLCL--EGY-YDGTIVHRVVPEFLIQGG 66
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 40.3 bits (90), Expect = 5e-05
Identities = 20/48 (41%), Positives = 28/48 (58%)
Frame = +1
Query: 130 GRIVVELRTDVTPKTCENFRALCTGEKGFGYKGSTFHRVIPNFMLQGG 273
G I ++L + PK +NF E G+ Y + FHR+I NFM+QGG
Sbjct: 464 GDISIKLYPEEAPKAVQNFTT--HAENGY-YDNTIFHRIIKNFMIQGG 508
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 39.9 bits (89), Expect = 6e-05
Identities = 21/48 (43%), Positives = 28/48 (58%)
Frame = +1
Query: 130 GRIVVELRTDVTPKTCENFRALCTGEKGFGYKGSTFHRVIPNFMLQGG 273
G I +EL TD P NF L ++G+ Y+ + FHR I FM+QGG
Sbjct: 285 GEINIELHTDYAPHAVYNFVQLA--KQGY-YRNTIFHRNIARFMIQGG 329
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 32.7 bits (71), Expect = 0.010
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +1
Query: 127 LGRIVVELRTDVTPKTCENFRALCTGEKGFGYKGSTFHRVIPNFMLQGG 273
+G +V++L PKTCENF LC K Y F+ + N+ Q G
Sbjct: 9 VGDLVIDLFVKEAPKTCENFLKLC---KLKYYNFCPFYNIQHNYTCQTG 54
>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 589
Score = 25.0 bits (52), Expect = 1.9
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 67 NKLKCLCREVFFDVTADGSPLGRIVVELRTDVTPKTCE 180
+K+ R++F DVTA IVV + T + CE
Sbjct: 229 SKISVDTRDIFIDVTATDKTKLEIVVNMMTTMFSCYCE 266
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.0 bits (52), Expect = 1.9
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = -3
Query: 164 VTSVLSSTTILPNGDPSAVTSKKTSRQRHFSXXXXXXXXXXXATTMTMRVSSP 6
+TSVLSS++ +P S +S T+ S ++ ++ SSP
Sbjct: 535 MTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSP 587
>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 172
Score = 24.6 bits (51), Expect = 2.5
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -3
Query: 164 VTSVLSSTTILPNGDPSAVTSKKTSRQRHFS 72
++S ++S + + N DP T K + RHF+
Sbjct: 35 LSSTVTSNSQVLNNDPLKETKKDKRKDRHFN 65
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 24.6 bits (51), Expect = 2.5
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Frame = +1
Query: 61 FANKLKCLCREVFFDVTADGSPLGRIVVELRTDVTPKT-CENFRALCTGEKGFGY 222
F L CL +F + + LR D TPK E F++ GF Y
Sbjct: 483 FGEDLDCLILGGYFGRGKQSGKINSFLCGLRMDYTPKDHSEKFQSFVRVGGGFTY 537
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 24.6 bits (51), Expect = 2.5
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 184 FRALCTGEKGFGYKGSTFHRVIP 252
F A+C EKG Y FH +P
Sbjct: 419 FDAICLLEKGITYSQHNFHLKLP 441
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 24.2 bits (50), Expect = 3.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 3 TRRRNTHRHCGSV*CSFLVVC**TKMSLPR 92
TRRR R CG V C F V+ ++SLP+
Sbjct: 291 TRRRRHCRLCGRVICRFCVL----EISLPQ 316
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 24.2 bits (50), Expect = 3.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 234 SGAFVAEALLASTESSEVFTGLRSDVSS 151
SGA V+ A AST+ S + S VSS
Sbjct: 238 SGAIVSNAKTASTDDSSSASSATSSVSS 265
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 23.8 bits (49), Expect = 4.4
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = -2
Query: 243 TVESGAFVAEALLASTESSEVFTGLRSDVSSQ-----LYNNPSQR 124
TVES A + S+ S+ F GL +S+ + NNPS R
Sbjct: 268 TVESMVHAAPSTTTSSRFSKFFNGLAGPETSKTSTPNMSNNPSPR 312
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 23.4 bits (48), Expect = 5.9
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = -2
Query: 168 RSDVSSQLYNNPSQ 127
RSDVSSQ+ N+P++
Sbjct: 69 RSDVSSQVQNSPNK 82
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,111,779
Number of Sequences: 5004
Number of extensions: 18725
Number of successful extensions: 67
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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