Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_P24
         (442 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    29   0.026
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    20   9.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    20   9.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    20   9.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    20   9.1  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    20   9.1  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    20   9.1  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 28.7 bits (61), Expect = 0.026
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +1

Query: 289 DATPRRYNRYGEAACDS*LREDPQSGRGRRPHNLATGFQQNEAREIEQTS 438
           DA P+ +  +G  A      EDP+   G R HNL T  Q+     +++ S
Sbjct: 96  DALPKLFKEWGTTALT--FEEDPEPFGGVRDHNLTTLCQELGISVVQKVS 143


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +2

Query: 200  LQVVKQLQVLAGLE 241
            +++VKQLQ L G++
Sbjct: 1384 VEIVKQLQKLQGID 1397


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +2

Query: 200  LQVVKQLQVLAGLE 241
            +++VKQLQ L G++
Sbjct: 1384 VEIVKQLQKLQGID 1397


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +2

Query: 200  LQVVKQLQVLAGLE 241
            +++VKQLQ L G++
Sbjct: 1384 VEIVKQLQKLQGID 1397


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +2

Query: 200  LQVVKQLQVLAGLE 241
            +++VKQLQ L G++
Sbjct: 1384 VEIVKQLQKLQGID 1397


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 103 FLPVRERPDCVLDR 144
           FL  +ERPD +  R
Sbjct: 203 FLDAKERPDSIYQR 216


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = +2

Query: 239 EKHNVYVLNELRDAMGVMQHHDAITGTEKQH 331
           + H+ +  + +     V+ HH A  G+ K H
Sbjct: 320 QNHHHHAGHHIHAQHHVVNHHVAANGSLKHH 350


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,521
Number of Sequences: 336
Number of extensions: 1983
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9880622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)