Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_P24
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    27   0.97 
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    26   3.0  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   3.9  
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    25   3.9  
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce...    24   9.0  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    24   9.0  
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    24   9.0  

>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 27.5 bits (58), Expect = 0.97
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +2

Query: 236 LEKHNVYVLNELRDAMGVMQHHDAITGTEKQHVTHDYERILNQAVDDALI-ISQQAFNKM 412
           ++K   Y+L+ L   +  ++ HD +  T K+ +T DYE   ++  +D LI I +   N +
Sbjct: 552 IQKKEYYLLSVL---LATVRDHDGVLQTWKKLITGDYE---DRRFNDGLIKIREYLVNDI 605

Query: 413 KP 418
           +P
Sbjct: 606 EP 607


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +2

Query: 5   EDGLQMNFMYSTPTCYL--KAVRDADPVLPTKQDDFF 109
           EDG+  + ++++   +L  K  R ADPV+ +  DD F
Sbjct: 20  EDGVYTSSLHNSNNPFLAPKTERVADPVMESMADDLF 56


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 119  SDPTAYWTGYFTSRPTTKYFEREANNYLQVVKQLQVLAGLEKHNVY 256
            S P    T + T+      FE+EAN +   +  L  +  ++K N+Y
Sbjct: 1737 SSPPPIHTNFDTNADIITLFEKEANEHPSSI-ALHFVYNVDKENIY 1781


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -1

Query: 415 LHFVESLLRDYEGVVHGLIEDPLVVMSHMLLLRTCY 308
           L F+E +  DYE  +H L      + +H+ L    Y
Sbjct: 401 LKFIEEIRNDYEERIHALESQNSALKAHLRLAVDAY 436


>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 14/55 (25%), Positives = 21/55 (38%)
 Frame = +2

Query: 41  PTCYLKAVRDADPVLPTKQDDFFPYASDPTAYWTGYFTSRPTTKYFEREANNYLQ 205
           PT       DAD +     DD           W  +F SRP  +YF     ++++
Sbjct: 13  PTVTYSTKDDADELF----DDLSSSPLHENVSWISWFCSRPGREYFVEVKEDFIE 63


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +2

Query: 113  YASDPTAYWTGYFTSRPTTKYFERE--AN-NYLQVVKQL 220
            + S   A    + T+ P TK +ER   +N NYLQ+V  L
Sbjct: 1901 FLSSKLANALSFSTTHPATKRWERREISNFNYLQIVNTL 1939


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 421 PWLHFVESLLRDYEGV 374
           PW HF++ +L  Y GV
Sbjct: 254 PWYHFIQLVLPHYIGV 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,766,527
Number of Sequences: 5004
Number of extensions: 34083
Number of successful extensions: 88
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)