Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_P22
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    29   0.43 
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    28   1.00 
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    28   1.3  
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch...    27   2.3  
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    27   3.0  
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    27   3.0  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    27   3.0  
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    26   4.0  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    26   5.3  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    26   5.3  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    25   7.0  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    25   7.0  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    25   9.3  
SPAC5D6.04 |||auxin family transmembrane transporter |Schizosacc...    25   9.3  
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    25   9.3  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 213 SVTEKRSQNNDCGENSVTIVTEKKIEDDASVSSSGENV 326
           SVT++  + N+C      I  E KIE++ SV S  + +
Sbjct: 379 SVTDESDEQNNCMSTPPKIEIESKIEEEISVVSKSKEI 416


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -2

Query: 572 PESASAPSTPRHAPRTSSAPNTTAPRTNTRSAT 474
           P +AS  S P HAP  SS P T+AP  +    T
Sbjct: 580 PVTASETSPP-HAPAVSSTPVTSAPPVSQTKVT 611


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 22/67 (32%), Positives = 28/67 (41%)
 Frame = +3

Query: 246 CGENSVTIVTEKKIEDDASVSSSGENVEIEDKSLPIVEPSALEAPEEGHAAQCSCPNCDE 425
           C    V     KK E D      G N E+ D   PIV+   L A E+GH  +     C +
Sbjct: 70  CVTERVLRNVNKKFEGDIKNCLDGFN-ELND---PIVQEKILRAFEQGHVDEEDEERCRK 125

Query: 426 LLSRFSE 446
           + S  SE
Sbjct: 126 MASDASE 132


>SPBC30D10.08 |mgm101||mitochondrial nucleoid
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 267

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 288 EDDASVSSSGENVEIEDKSLPIVEPSALEAPEEGH 392
           + D ++    EN+E ++ S   ++ S LE PE GH
Sbjct: 61  QKDKNIYEPKENLEEKELSEGFLDESRLEIPEAGH 95


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +3

Query: 189 PRIQGLFHSVTEKRSQNNDCGENS 260
           P I     SVT KRSQN   G NS
Sbjct: 76  PLISSKQFSVTSKRSQNGSSGSNS 99


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 593 EARRRWRPESASAPSTPRHAPRTSSAPNTTAPRTNTRSAT 474
           ++ R    ES++ PST    P TS +P  T   TN+++ +
Sbjct: 343 DSLRNTAVESSTEPSTSNGFPATSVSPPLTIDLTNSQTGS 382


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 572 PESASAPS-TPRHAPRTSSAPNTTAPRTNT 486
           P+S  A S TPRH P T S  +T+ P  +T
Sbjct: 370 PDSVLANSPTPRHLPYTWSRHSTSGPSRST 399


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -2

Query: 575 RPESASAPSTPRHAPRTSSAPN--TTAPRTNT 486
           R    SA  TP + P  +SAPN    AP+ NT
Sbjct: 11  RAGKMSAAPTPHNTPSGTSAPNFGAKAPQVNT 42


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 213 SVTEKRSQNNDCGENSVTIVTEKKIEDDASVSSSGENVEIEDKS 344
           S +E  S++ND   +S    +E   ED  S SSS ++ E E  S
Sbjct: 117 SESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDS-ESESSS 159



 Score = 25.8 bits (54), Expect = 5.3
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 213 SVTEKRSQNNDCGENSVTIVTEKKIEDDASVSSSGENVEIEDKS 344
           S +E  S++ND   +S    +E   ED  S SSS ++ E E  S
Sbjct: 171 SESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDS-ESESSS 213



 Score = 25.8 bits (54), Expect = 5.3
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 213 SVTEKRSQNNDCGENSVTIVTEKKIEDDASVSSSGENVEIEDKS 344
           S +E  S++ND   +S    +E   ED  S SSS ++ E E  S
Sbjct: 225 SESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDS-ESESSS 267


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 578 WRPESASAPSTPRHAPRTSSAPNTTAPRTNTRSATL*RF 462
           +RP S S  S+  H+PRT S    T  +T+++ + L  F
Sbjct: 352 FRPFSPSYRSSDTHSPRTRSPNVQTHKKTSSQPSDLSSF 390


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = +3

Query: 279 KKIEDDASVSSSGENVEIEDKSLPIVEPSALEAPEEGHAAQCSCPNCDELLSRFSECSI 455
           K ++  ASV+S   +     +      PS ++  +E H++  SC +C+   +R   C+I
Sbjct: 643 KALQRVASVTSPSRHNSDSKEKKQTKSPSLVKTLKEMHSSDQSCADCN-TTARVEWCAI 700


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 572 PESASAPSTPRHAPRTSSAPNTTAPRTN 489
           P++  APS  +  P   + PN + P++N
Sbjct: 319 PKTEGAPSNAQFRPSLPATPNGSVPQSN 346


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 177 ITMFPRIQGLFHSVTEKR-SQNNDCGENSVTIVTEKKIEDDASVS 308
           +  F  IQ  FH     R + N++C  NS+  + +KK  + +S++
Sbjct: 575 VRFFHAIQSHFHLEGPIRYNMNSNCTPNSIASIIQKKSYNVSSIT 619


>SPAC5D6.04 |||auxin family transmembrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 231 SQNNDCGENSVTIVTEKKIEDDASVSSSGENVEIE 335
           S N D  +NSV       ++ D+S  S  +NV++E
Sbjct: 215 SANVDGVQNSVQANEGSTVQTDSSAISKNDNVQVE 249


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +3

Query: 183 MFPRIQGLFHSVTEKR 230
           M PR++GLF+S+++ R
Sbjct: 210 MLPRVRGLFYSISQLR 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,328,839
Number of Sequences: 5004
Number of extensions: 41709
Number of successful extensions: 182
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)