Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_P22
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0086 + 13259130-13259218,13260993-13261632,13262607-13262723 32 0.34
09_06_0347 + 22445962-22446154,22446495-22446616,22446764-224468... 31 1.0
12_02_0895 + 24094809-24094886,24097197-24097402,24097493-24097919 30 1.8
03_06_0628 - 35179951-35180265,35180653-35180889,35180982-351811... 30 1.8
06_01_1050 + 8262033-8262165,8262262-8262391,8262486-8263026 29 2.4
03_03_0048 + 14065317-14065433,14065646-14065726,14066566-140669... 29 2.4
05_05_0383 + 24551125-24551973 29 4.1
12_02_0736 + 22650641-22650689,22650827-22650975,22651783-226518... 28 5.5
09_04_0042 - 14055885-14056142,14057508-14057774,14057859-140592... 28 5.5
02_01_0362 + 2607097-2607371,2607766-2608612,2608842-2608910,260... 28 5.5
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 28 7.2
06_01_0556 - 3957640-3957807,3957911-3958033 28 7.2
02_05_1127 + 34292894-34293284,34293948-34295443 28 7.2
02_02_0119 + 6978697-6979045,6979519-6979581,6979757-6979866,697... 28 7.2
04_04_0138 + 23067885-23068245,23068393-23068634 27 9.6
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879... 27 9.6
>07_03_0086 + 13259130-13259218,13260993-13261632,13262607-13262723
Length = 281
Score = 32.3 bits (70), Expect = 0.34
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Frame = +3
Query: 213 SVTEKRSQNNDCGENSVTIVTEKKIE-DDASVSSSGENVEIEDKSLPIVEPSALEAPEEG 389
S Q + C N E E D S+S SG+ + ++P +EP + A +E
Sbjct: 116 SNNNNNGQESSCAGNIYEGCNEPAKEVDGRSLSVSGDLHSANETTIPNLEPPEIRAEQEK 175
Query: 390 HAAQCSCP-NCDELLSRFSEC 449
A C C+ L R S C
Sbjct: 176 DNATIKCDLPCEGWLKRKSNC 196
>09_06_0347 +
22445962-22446154,22446495-22446616,22446764-22446885,
22447405-22447594,22447874-22448014,22448257-22448724,
22448842-22449609,22450185-22450373
Length = 730
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 216 VTEKRSQNNDCGENSVTIVTEKKIEDDASVS-SSGENVEIEDKSLPIVEPSALEAPE 383
V EKRS ++D + + +K + + ++ +GE+ I D+++PI E S E E
Sbjct: 308 VLEKRSAHSDRIIKDLMLQRDKAVREAEAIRVKNGESTAIADRTIPITELSISEIKE 364
>12_02_0895 + 24094809-24094886,24097197-24097402,24097493-24097919
Length = 236
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/52 (38%), Positives = 24/52 (46%)
Frame = +3
Query: 309 SSGENVEIEDKSLPIVEPSALEAPEEGHAAQCSCPNCDELLSRFSECSICLE 464
S+ E DK I S AP + A C + DEL +ECSICLE
Sbjct: 142 STAETFNTADKHTFIAHCSE-PAPTQ-EVASCRVTDDDELAGPSTECSICLE 191
>03_06_0628 -
35179951-35180265,35180653-35180889,35180982-35181140,
35181673-35181864,35182696-35182983,35183289-35183342,
35183561-35183671,35183780-35184011,35184097-35184302
Length = 597
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -2
Query: 566 SASAPSTPRHAPRTSSAPNTTAPR 495
S + P PRH R AP TTAPR
Sbjct: 8 SRALPPPPRHCARRPRAPPTTAPR 31
>06_01_1050 + 8262033-8262165,8262262-8262391,8262486-8263026
Length = 267
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 318 ENVEIEDKSLPIVEPSALEAPEEGHAAQCSCPNC 419
E+ E E + P++EP + AP AA+ + NC
Sbjct: 155 ESEEEEQEPSPLIEPHEITAPPPAAAAEAATSNC 188
>03_03_0048 +
14065317-14065433,14065646-14065726,14066566-14066967,
14067131-14067199,14067278-14067360,14067503-14067555,
14067659-14067780,14068033-14068386,14068479-14068578,
14068663-14068895
Length = 537
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = -2
Query: 587 RRRWRPESASAPSTPRHAPRTSSAPNTTAPRTNTRSAT 474
RRR R S+P TPR A +AP TAPR ++R+ T
Sbjct: 156 RRRGRTGGCSSP-TPRAASLACAAP--TAPRPSSRTTT 190
>05_05_0383 + 24551125-24551973
Length = 282
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 231 SQNNDCGENSVTIVTEKKIEDDASVSSSGENVEIEDKSLPIVEPSALEAPE 383
S ++ C + V V + DD + + GE V E +++P EP EAPE
Sbjct: 213 SVSDYCVHHCVCPVVVVRYPDDGAAAGGGEAVGDELRTVPEDEPVYHEAPE 263
>12_02_0736 +
22650641-22650689,22650827-22650975,22651783-22651839,
22653534-22653611,22654688-22654953,22655249-22655351
Length = 233
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 321 NVEIEDKSLPIVEPSALEAPEEGHAAQCSCPNCDELLSRFSEC 449
+ ++D + + E E EE AA+ +CP CDE F C
Sbjct: 12 DARLQDALIGMEEAEGSEGEEE--AAEVACPFCDEEFDGFGLC 52
>09_04_0042 -
14055885-14056142,14057508-14057774,14057859-14059292,
14059378-14059539,14059642-14059768,14059869-14060200,
14060289-14061083,14061379-14061714,14061791-14062730,
14063338-14063588
Length = 1633
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -2
Query: 596 GEARRRWRPESASAPSTP--RHAPRTSSAPNTTAPRTNTRSAT 474
GEARRR++ E A P +P R A + P AP + RS T
Sbjct: 28 GEARRRYQGEGAPRPRSPESRSAFEPPTPPRARAP--DARSGT 68
>02_01_0362 +
2607097-2607371,2607766-2608612,2608842-2608910,
2609968-2610202,2610454-2610536,2610924-2611046,
2611326-2611379
Length = 561
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 590 ARRRWRPESASAPSTPRHAPRTSSAPNTTAP 498
+RR + ++S+P T AP +S PNT+ P
Sbjct: 40 SRRSFSTSASSSPCTSPPAPPETSPPNTSTP 70
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -2
Query: 581 RWRPESASAPSTPRHAPRTSSAPNTTAPRTNTRSAT 474
++ P A +PS+PR +P + ++PN +P + T S T
Sbjct: 1752 KYSPSHAYSPSSPRLSPYSQTSPN-YSPTSPTYSPT 1786
>06_01_0556 - 3957640-3957807,3957911-3958033
Length = 96
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +3
Query: 192 RIQGLFHSVTEKRSQNNDCGENSVTIVTEKKIEDDASVSSSGENVEIEDKS 344
R+ HS K++ NN G+N V +V K D S E E+KS
Sbjct: 25 RLDAESHSAFSKQTVNNTSGDNVVAVVVAK---TDGEPSGEMEKAISEEKS 72
>02_05_1127 + 34292894-34293284,34293948-34295443
Length = 628
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -2
Query: 590 ARRRWRPESAS-APSTPRHAPRTSSAPNTTAPRTNTRSA 477
A R RP + S AP PRH PR + + +PR + A
Sbjct: 35 ASRSSRPLAPSRAPGRPRHPPRPTRRAHPASPRASWAEA 73
>02_02_0119 +
6978697-6979045,6979519-6979581,6979757-6979866,
6979969-6980154,6980266-6980361,6980493-6980564,
6980798-6980909,6982448-6982534,6982680-6983872
Length = 755
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -2
Query: 569 ESASAPSTPRHAPRTSSAPNTTAPRTN 489
+SASAP+T AP T++AP TAP +
Sbjct: 723 QSASAPATGA-APATTAAPAPTAPENS 748
>04_04_0138 + 23067885-23068245,23068393-23068634
Length = 200
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -2
Query: 560 SAPSTPRHAPRTSSAPNTTAPRTNT 486
+APS P PR S PN+TAP T T
Sbjct: 127 AAPSPPVSVPR--STPNSTAPSTPT 149
>02_04_0481 + 23284296-23284448,23284553-23284753,23284855-23287971,
23288510-23289353,23289468-23290120,23290573-23290676,
23290898-23291000
Length = 1724
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +3
Query: 174 IITMFPRIQGLFHSVTEKRSQNNDCGENSVTIVTEKKIEDDASVSSSGENVEIEDKSLPI 353
+ ++ + L H V R +N D N + E + +AS +S E+E KS +
Sbjct: 1481 LFSLIDEVYALRHEVDTLRYENEDLHLNLESHTREMEQLKEASRNSDSNRRELESKSSEL 1540
Query: 354 VE 359
+E
Sbjct: 1541 LE 1542
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,313,755
Number of Sequences: 37544
Number of extensions: 265632
Number of successful extensions: 1214
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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