Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_P22
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79759-6|CAB02135.3|  452|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z79752-6|CAB02080.2|  423|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z48621-6|CAA88544.1|  238|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z81548-4|CAB04465.1|  916|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z81503-5|CAB04114.1|  916|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U23484-9|AAC46771.1|  304|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AL132904-14|CAC35847.2|  258|Caenorhabditis elegans Hypothetical...    28   4.9  
AF242767-1|AAG36874.1|  258|Caenorhabditis elegans SF2 protein.        28   4.9  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z71185-7|CAA94907.2|  520|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z79759-6|CAB02135.3|  452|Caenorhabditis elegans Hypothetical
           protein ZK858.7 protein.
          Length = 452

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/71 (29%), Positives = 35/71 (49%)
 Frame = +3

Query: 168 FIIITMFPRIQGLFHSVTEKRSQNNDCGENSVTIVTEKKIEDDASVSSSGENVEIEDKSL 347
           F+  + F +  GLF         NN C   SV  + E+    +ASV++S  + E+ + S 
Sbjct: 47  FVADSAFGKPHGLFEV------SNNQCLPMSVDRLIEELQLQEASVATSSIDPEVTEPSE 100

Query: 348 PIVEPSALEAP 380
           P ++P  + AP
Sbjct: 101 PSLDPRVVIAP 111


>Z79752-6|CAB02080.2|  423|Caenorhabditis elegans Hypothetical
           protein D2005.6 protein.
          Length = 423

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 578 WRPESASAPSTPRHAPRTSSAPNTTAPRTNTRSA 477
           +RP    APS PR +    S P +TAP   T  A
Sbjct: 123 YRPYPQPAPSPPRRSRTAPSRPRSTAPTMGTLGA 156


>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical protein
            F52B5.3 protein.
          Length = 1425

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 276  EKKIEDDASVSSSGENVEIEDKSLP 350
            E+ IED+  +   GE++ +EDK LP
Sbjct: 1120 ERTIEDNNIIFEEGEDISVEDKPLP 1144


>Z48621-6|CAA88544.1|  238|Caenorhabditis elegans Hypothetical
           protein R07B1.7 protein.
          Length = 238

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -2

Query: 533 PRTSSAPNTTAPRTNTRSATL 471
           P T+SAP TT PRT  +S TL
Sbjct: 35  PMTTSAPTTTMPRTVCQSCTL 55


>U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical
           protein F42C5.4 protein.
          Length = 712

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 396 AQCSCPNCDELLSRFSECSICLEPL 470
           + C+   C +   +F+EC IC EPL
Sbjct: 52  SSCNHSLCSQCFDKFTECPICKEPL 76


>Z81548-4|CAB04465.1|  916|Caenorhabditis elegans Hypothetical
           protein F14F7.5 protein.
          Length = 916

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -2

Query: 572 PESASAPSTPRHAPRTSSAP---NTTAPRTNTRSATL 471
           P + S PS P+  PR SS P     +AP T+T S  L
Sbjct: 791 PSNQSPPSQPQPGPRGSSPPAPSAPSAPETDTNSLAL 827


>Z81503-5|CAB04114.1|  916|Caenorhabditis elegans Hypothetical
           protein F14F7.5 protein.
          Length = 916

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -2

Query: 572 PESASAPSTPRHAPRTSSAP---NTTAPRTNTRSATL 471
           P + S PS P+  PR SS P     +AP T+T S  L
Sbjct: 791 PSNQSPPSQPQPGPRGSSPPAPSAPSAPETDTNSLAL 827


>U23484-9|AAC46771.1|  304|Caenorhabditis elegans Hypothetical
           protein EEED8.11 protein.
          Length = 304

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 572 PESASAPSTPRHAPRTSSAPNTTAPRTNTRSAT 474
           P+S S PST    P T++   TT   T T + T
Sbjct: 54  PKSTSTPSTSTSTPTTTTTTTTTTTTTPTTTTT 86


>AL132904-14|CAC35847.2|  258|Caenorhabditis elegans Hypothetical
           protein Y111B2A.18 protein.
          Length = 258

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -2

Query: 596 GEARRRWRPESASAPSTPRHAPRTSSAPNTTAPRTNTRSAT 474
           G  R R R   A   ++P+++PR S + + +  R+ +RSA+
Sbjct: 208 GRDRSRSRSPRAERRASPKYSPRRSRSRSRSRSRSRSRSAS 248


>AF242767-1|AAG36874.1|  258|Caenorhabditis elegans SF2 protein.
          Length = 258

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -2

Query: 596 GEARRRWRPESASAPSTPRHAPRTSSAPNTTAPRTNTRSAT 474
           G  R R R   A   ++P+++PR S + + +  R+ +RSA+
Sbjct: 208 GRDRSRSRSPRAERRASPKYSPRRSRSRSRSRSRSRSRSAS 248


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 551 STPRHAPRTSSAPNTTAPRTNTRSAT 474
           STP  AP+TS++P TT   T     T
Sbjct: 535 STPTMAPQTSASPTTTPTHTTASQPT 560


>Z71185-7|CAA94907.2|  520|Caenorhabditis elegans Hypothetical
           protein C35A5.5 protein.
          Length = 520

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 110 FSVRTYCELYIILFYFVISVYNNNNVSQN 196
           ++V  Y  L +I FYF+I +Y  NN   N
Sbjct: 23  WNVVIYFVLILICFYFIIPIYFPNNDKMN 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,194,303
Number of Sequences: 27780
Number of extensions: 242027
Number of successful extensions: 1109
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)