Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_P21
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.10c |cox5||cytochrome c oxidase subunit V|Schizosaccharo...    41   1e-04
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    29   0.63 
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    28   0.84 
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    28   0.84 
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces...    26   4.5  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   7.8  
SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase Idi1|S...    25   7.8  

>SPCC338.10c |cox5||cytochrome c oxidase subunit
           V|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 174

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 2/149 (1%)
 Frame = +1

Query: 124 CTR-AGSSSVGEVSKIGDREWVGYGLNGQPNYVDRADFPMPAIRFRADTPDIKAIREKEK 300
           CTR A + S    + +   +  G  +  +P  VD  D     +        I  +  ++K
Sbjct: 5   CTRNAATVSAAATNALQKEQPSGEAMIARPRLVD-LDKRWGIMSQEEKDGLITDLYARQK 63

Query: 301 SDWRKLTLEEKKALYRASFCQTYSEFQAPTGEWKGVVGWGLLIASLSVWIFM-GMKLFVY 477
             W  L++EEKKA Y  +F +     +A +   +  V WG  +A L++ + + G+     
Sbjct: 64  QPWTTLSIEEKKAAYWIAFGEHGP--RAFSHISQKTVFWG-TVAGLTIGVVLFGLIRTQA 120

Query: 478 SPLPVTFDEEHQKAQLKRMLDLKVNPVDG 564
           +P P T   E Q+   + M + K+NP+ G
Sbjct: 121 APSPRTMTREWQEKSNEYMKENKINPISG 149


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 506 SSSNVTGSGLYTNNFIPMKIQTESDAINRPQPTTPFHSPVGAWNSEYVWQ 357
           S+S    S    + F P   +T S  +    PT+P HSPV   ++E V Q
Sbjct: 324 SASASLASSPTRSAFRPKTSETVSSEVVSSPPTSPLHSPVKPVSNEQVEQ 373


>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = +1

Query: 241 PAIRFRADTPDIKAIREKEKSDWRKLTLEEKKALYRASFCQTYSEF----QAPTGEWK 402
           P   FR +  + K  RE++K++W+K   EE KA ++ +  +  +E+    +    EWK
Sbjct: 110 PPAWFRREMGEWKKAREEDKAEWKK-AREEDKAEWKKAREEDKAEWKKAREEDKAEWK 166



 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +1

Query: 262 DTPDIKAIREKEKSDWRKLTLEEKKALYRASFCQTYSEFQAPTGEWK 402
           D  + K  RE++K++W+K   E+K    +A   +   E++    EW+
Sbjct: 150 DKAEWKKAREEDKAEWKKAREEDKAEWKKAR--EEDKEWRNSMDEWR 194



 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +1

Query: 262 DTPDIKAIREKEKSDWRKLTLEEKKALYRAS---FCQTYSEFQAPTGEWK 402
           D  + K  RE++K++W+K   E+K+  +R S   + ++  E++    EW+
Sbjct: 161 DKAEWKKAREEDKAEWKKAREEDKE--WRNSMDEWRKSMDEWRKSMDEWR 208


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = -1

Query: 442 QRAMQSTDPSPQLPSILRWGPGTRNMSGRMKLGRE---LSSLQGSVCASHSSPS 290
           +R+  +TD +P   S +RW     + SG++K G      S   G  C  H   S
Sbjct: 224 RRSFITTDVNPYYDSFVRWQVNHLHDSGKIKFGERYTVYSIKDGQPCMDHDRKS 277


>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -1

Query: 424 TDPSPQLPSI-LRWGPGTRNMSGRMKLGRELSS 329
           TDP+P++PS+ L W   T N+S R+ L ++  S
Sbjct: 291 TDPNPKIPSLGLVW---TNNISTRLALIKKTDS 320


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 348 SVESFLLFKGQFAPVTLLLLTDCL 277
           ++ES +   G +AP TL L++D L
Sbjct: 398 NIESLMNDDGNYAPTTLFLISDFL 421


>SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase
           Idi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 227

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 41  SKEKDTFSAIWPTSCCA 91
           ++EK TF ++W  +CC+
Sbjct: 72  AEEKITFPSLWTNTCCS 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,500,108
Number of Sequences: 5004
Number of extensions: 54504
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)