Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_P21
(571 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0407 - 17699375-17699851,17700827-17701009,17702292-17702594 33 0.21
02_01_0317 - 2128660-2128776,2129281-2129364,2129463-2129543,213... 30 1.1
02_01_0407 - 2963907-2964063,2965158-2965311,2965427-2968527,296... 30 1.5
02_01_0403 - 2938242-2941334 30 1.5
02_03_0335 + 17882461-17882527,17882616-17884723 29 2.0
01_06_1271 + 35890317-35890762,35891113-35891173,35891669-358918... 29 2.0
07_03_0615 + 19983003-19983238,19983297-19983558,19983651-199839... 29 2.6
06_03_0232 - 18507872-18508792 29 3.4
08_02_1595 - 28114751-28114858,28115018-28115283,28116609-281167... 28 4.6
02_01_0168 + 1162447-1162866,1162940-1163317,1163606-1163829,116... 28 4.6
10_08_1023 - 22341815-22342042,22342179-22342247,22342717-223428... 28 6.0
09_02_0621 - 11307417-11307813,11308078-11308246,11308372-113084... 27 8.0
03_01_0314 - 2477593-2480685 27 8.0
>10_08_0407 - 17699375-17699851,17700827-17701009,17702292-17702594
Length = 320
Score = 32.7 bits (71), Expect = 0.21
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 382 APTGEWKGVVGWGLLIASLS--VWIFMGMKLFVYSPLPVTFDEEHQKAQLKRM 534
A E+ + GWG+ L+ W+F G K + PV++D + Q +++
Sbjct: 7 AGASEYLAITGWGIDDVKLAKKAWVFAGQKCLKFDATPVSYDIDVQAMSSEKL 59
>02_01_0317 -
2128660-2128776,2129281-2129364,2129463-2129543,
2130230-2130407,2130530-2130673,2130780-2130826,
2131149-2131205,2131989-2132087,2132301-2132423,
2132514-2132636,2132859-2132972,2133612-2133800,
2134408-2134574,2134707-2134791,2134891-2135085,
2135162-2135251,2135418-2135603,2135885-2135959,
2136757-2136957
Length = 784
Score = 30.3 bits (65), Expect = 1.1
Identities = 34/125 (27%), Positives = 50/125 (40%), Gaps = 1/125 (0%)
Frame = +1
Query: 166 IGDREWVGYGLNGQPNY-VDRADFPMPAIRFRADTPDIKAIREKEKSDWRKLTLEEKKAL 342
+G WV L + + R F A + D P IK + E E + K+A+
Sbjct: 70 VGKSNWVSMFLASYEDCRMQRTQFAK-ANPLKLDIPAIK-LEEHEAVTGEAVLSSLKRAI 127
Query: 343 YRASFCQTYSEFQAPTGEWKGVVGWGLLIASLSVWIFMGMKLFVYSPLPVTFDEEHQKAQ 522
R YS FQA G W G G + + + + L+V L EHQK +
Sbjct: 128 AR------YSTFQAHDGHWPGDYGGPMFLMPGLI-----ITLYVSGALNTALSSEHQK-E 175
Query: 523 LKRML 537
++R L
Sbjct: 176 IRRYL 180
>02_01_0407 -
2963907-2964063,2965158-2965311,2965427-2968527,
2968684-2968697
Length = 1141
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -2
Query: 363 LAE*SSVESFLLFKGQFAPVTLLLLTDCLNIRSVRTESNSRHGKVSPVNVVRLP 202
+ E +E LL L++C N++++ +SNS G++S +N LP
Sbjct: 294 IGELKKLEELLLGHNNMYGEVPSTLSNCTNLKTIDIKSNSFSGELSKINFSTLP 347
>02_01_0403 - 2938242-2941334
Length = 1030
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -2
Query: 291 LTDCLNIRSVRTESNSRHGKVSPVNVVRLP 202
L+DC N+ ++ +SNS GK++ VN LP
Sbjct: 303 LSDCTNLVTIDLKSNSFSGKLTNVNFSTLP 332
>02_03_0335 + 17882461-17882527,17882616-17884723
Length = 724
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 285 DCLNIRSVRTESNSRHGKVSPVNVVRLPV*AIAHPFTV 172
DCL+ + + + RHG + P NV+R+ HP+ V
Sbjct: 560 DCLSALAAASSAGIRHGDIRPENVIRVSN-GSRHPYFV 596
>01_06_1271 +
35890317-35890762,35891113-35891173,35891669-35891813,
35891903-35891982,35892465-35892548,35892644-35892718,
35893150-35893242,35893315-35893503
Length = 390
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 118 PACTRAGSSSVGEVSKIGDREWVGYGLNGQ 207
PA A +S + S+ G R WVGY L Q
Sbjct: 13 PAAAHAPASKASKASRPGPRSWVGYLLREQ 42
>07_03_0615 +
19983003-19983238,19983297-19983558,19983651-19983906,
19983982-19984044,19984131-19984570
Length = 418
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +2
Query: 242 RLLDSVRTLLILRQSVRRRRVTGAN*PLKRRKLSTELHSARHIPSSRPPPENG 400
R+++S+R++L + + R V A+ ++R + T A H+P PPP G
Sbjct: 201 RMVESMRSILRVL-TCRADDVARADAAVQRPPVPTGPRPAAHVPRPTPPPHGG 252
>06_03_0232 - 18507872-18508792
Length = 306
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -3
Query: 203 PFKP*PTHSRSPILETSPTEDDPALVQAGTRTASNSARRSKKLAILLKMCLFLSK 39
PF+P S SP+L S L + + ++S+S+ K L + MC +K
Sbjct: 140 PFRPRAPPSSSPVLPRSVPSTSAGLSSSASPSSSSSSPIKKALQAIFCMCAKTAK 194
>08_02_1595 -
28114751-28114858,28115018-28115283,28116609-28116703,
28117179-28118154,28118245-28118369,28118443-28118569,
28118606-28118843
Length = 644
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -1
Query: 499 RTSRAAG-CTQITSFP*KSRQRAMQSTDPSPQLPSILRWGP 380
R SR AG CT+ ++ + ++ +ST PSP+ P ++R P
Sbjct: 300 RNSRMAGVCTENSTSDSEIQECHPRSTQPSPKGPGVVRESP 340
>02_01_0168 +
1162447-1162866,1162940-1163317,1163606-1163829,
1163929-1163992,1164521-1164717,1164849-1165062
Length = 498
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 160 RLLQLKMIRPWCRQVRGLHLTVHGAARSWPYC*KCVFFFRK 38
RLLQL I ++RG++ T G S+ Y C+ F ++
Sbjct: 312 RLLQLAFIVKHWAKLRGVNETYRGTLSSYAYVLMCISFLQQ 352
>10_08_1023 - 22341815-22342042,22342179-22342247,22342717-22342840,
22343193-22343317,22343815-22344276,22344357-22344700,
22345061-22345406,22345492-22345941,22346760-22347051,
22347171-22347515,22347611-22347834,22348072-22348563,
22348664-22349056,22349601-22349741,22349845-22350207,
22350494-22352683,22353298-22353360,22353434-22353535,
22353672-22354027,22354326-22354413,22354517-22354750,
22355508-22355975
Length = 2632
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 509 CSSSNVTGSGLYTNNFIPMKIQTESDAINRPQPTTPFHSP 390
C+SS++ G L + IP+ S + QPTTP + P
Sbjct: 1706 CASSSLNGEELIRDGGIPLLATLLSRCMCIVQPTTPANEP 1745
>09_02_0621 -
11307417-11307813,11308078-11308246,11308372-11308440,
11308635-11308761,11308985-11309253,11309356-11309522,
11309730-11309801,11310205-11310329
Length = 464
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -3
Query: 335 FFSSRVSLRQSLFSFSRIALISGVSARNLIAGMG 234
+FSSR+++R +FSF + L + ++ G+G
Sbjct: 335 YFSSRLTMRSDVFSFGVVLLETVTGEPPIVPGVG 368
>03_01_0314 - 2477593-2480685
Length = 1030
Score = 27.5 bits (58), Expect = 8.0
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = -2
Query: 387 GGLELGICLAE*SSVESFLLFKGQFAPVTLLLLTDCLNIRSVRTESNSRHGKVSPVNVVR 208
G + G+C + ++ +LF F LT C + VR +N +G V P+ + R
Sbjct: 370 GPVPAGLC--DSGNLTKLILFNNVFTGAIPAGLTTCSTLVRVRAHNNRLNGTV-PLGLGR 426
Query: 207 LP 202
LP
Sbjct: 427 LP 428
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,782,780
Number of Sequences: 37544
Number of extensions: 414824
Number of successful extensions: 1254
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -