Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_P21
         (571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82077-6|CAB63334.1|  175|Caenorhabditis elegans Hypothetical pr...   119   1e-27
Z71265-6|CAA95837.1|  399|Caenorhabditis elegans Hypothetical pr...    30   1.0  
Z71258-17|CAA95787.1|  399|Caenorhabditis elegans Hypothetical p...    30   1.0  
U30248-1|AAC13874.1|  399|Caenorhabditis elegans transcription f...    30   1.0  
U13614-1|AAA21347.1|  399|Caenorhabditis elegans protein ( Caeno...    30   1.3  
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ...    27   7.2  
AC024757-6|AAF59453.2|  305|Caenorhabditis elegans Hypothetical ...    27   7.2  
AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal ne...    27   9.5  

>Z82077-6|CAB63334.1|  175|Caenorhabditis elegans Hypothetical
           protein W09C5.8 protein.
          Length = 175

 Score =  119 bits (287), Expect = 1e-27
 Identities = 61/128 (47%), Positives = 80/128 (62%)
 Frame = +1

Query: 163 KIGDREWVGYGLNGQPNYVDRADFPMPAIRFRADTPDIKAIREKEKSDWRKLTLEEKKAL 342
           K   RE VGYG NG   Y DR D+  PAIRFR +   I  IR KE++DW+ L+ EEKK L
Sbjct: 29  KAAGRELVGYGANGDNIYQDRLDYWYPAIRFRKEDSVIAPIRAKEQADWKNLSAEEKKLL 88

Query: 343 YRASFCQTYSEFQAPTGEWKGVVGWGLLIASLSVWIFMGMKLFVYSPLPVTFDEEHQKAQ 522
           YR SF QT SEF+APTG WK +    L +  L  +  + + + VY  LP TF  E+++AQ
Sbjct: 89  YRYSFRQTLSEFEAPTGYWKVISAVILSVLGLCTYYAVLLNVCVYPELPPTFQNEYKEAQ 148

Query: 523 LKRMLDLK 546
           ++R L L+
Sbjct: 149 VERALVLE 156


>Z71265-6|CAA95837.1|  399|Caenorhabditis elegans Hypothetical
           protein M05B5.5a protein.
          Length = 399

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 458 PMKIQTESDAINRPQPTTPFHSPVGAWNSEYVW 360
           P     E+ AI  PQP T   +P+ A +S Y W
Sbjct: 127 PATNSAETSAIVAPQPLTNLTAPIDAMSSMYTW 159


>Z71258-17|CAA95787.1|  399|Caenorhabditis elegans Hypothetical
           protein M05B5.5a protein.
          Length = 399

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 458 PMKIQTESDAINRPQPTTPFHSPVGAWNSEYVW 360
           P     E+ AI  PQP T   +P+ A +S Y W
Sbjct: 127 PATNSAETSAIVAPQPLTNLTAPIDAMSSMYTW 159


>U30248-1|AAC13874.1|  399|Caenorhabditis elegans transcription
           factor E12/47 homolog protein.
          Length = 399

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 458 PMKIQTESDAINRPQPTTPFHSPVGAWNSEYVW 360
           P     E+ AI  PQP T   +P+ A +S Y W
Sbjct: 127 PATNSAETSAIVAPQPLTNLTAPIDAMSSMYTW 159


>U13614-1|AAA21347.1|  399|Caenorhabditis elegans protein (
           Caenorhabditis elegansN2 basic-helix-loop-helix
           transcription factor E12/47homolog mRNA, complete cds.
           ).
          Length = 399

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 458 PMKIQTESDAINRPQPTTPFHSPVGAWNSEYVW 360
           P     E+ AI  PQP T   +P+ A +S Y W
Sbjct: 127 PATNSAETSAIVAPQPLTNLTAPIDAXSSMYTW 159


>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
           protein H11E01.3 protein.
          Length = 1464

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -3

Query: 278 LISGVSARNLIAGMGKSALST*LGCPFKP*PTHSRSPILETSPTED 141
           + +G +A    A +G +A++       +P P+  R+P+LET  T D
Sbjct: 302 IFTGAAAAATAAAIGTAAINMDTLIDKEPEPSPPRTPVLETQKTFD 347


>AC024757-6|AAF59453.2|  305|Caenorhabditis elegans Hypothetical
           protein Y37E11AL.3a protein.
          Length = 305

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 381 GPHRRMEGSCGLGSVDCIALCLDFHGNE 464
           G  R++   CG+   D +   LD+HG E
Sbjct: 128 GMSRKLHDECGINEKDILYQGLDYHGTE 155


>AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal
            neurexin-like protein 1 protein.
          Length = 1655

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 60   FQQYGQ-LLAAPCTVRCSPRTCLHQGRIIFSW 152
            ++ YG  L+   C V CS  TCL+ G    +W
Sbjct: 1145 YEAYGPALVKVGCEVGCSSITCLNGGHCSVAW 1176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,221,163
Number of Sequences: 27780
Number of extensions: 321987
Number of successful extensions: 1029
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)