Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_P19
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    30   0.27 
SPCC1840.09 |||NAD dependent epimerase/dehydratase family protei...    27   1.5  
SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces pombe...    27   1.5  
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    26   3.4  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   3.4  
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    26   4.5  
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...    25   5.9  
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    25   5.9  

>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 233

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = +3

Query: 132 NLELRVYGDGERPERFNLQKA----WRRQRKQEKLDQETETGQELEAFTAPAVEG 284
           N+EL   G G+   R N  K     W+ + +Q    +E + G+E  A  A A EG
Sbjct: 165 NIELTAGGGGKTEARMNKIKEKNRKWKEEMRQRVASEEQQAGEEKMARKAVADEG 219


>SPCC1840.09 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 216 EKLDQETETGQELEAFTAPAVEGPVEIS 299
           E L  E      LEA + P+V+GPVEIS
Sbjct: 235 EPLPSEEVALAALEAISDPSVKGPVEIS 262


>SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 396

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +3

Query: 201 RQRKQEKLDQETETGQELEAFTAPAVEGPVEISPHGRTGEIAHDESTSDWQQVK 362
           RQ K+ K+  ETE  Q+L  +   A+E   E+S   ++GE+       +W   K
Sbjct: 53  RQAKEHKMRFETECDQKLRNWKRLAIER--EVSEE-QSGEVQFPRWIDEWANTK 103


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 204 QRKQEKLDQETETGQELEAFTAPAVEGP 287
           + +QEK  QETET ++++   AP  E P
Sbjct: 528 KEQQEKFKQETET-EKIDVSYAPETESP 554


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
 Frame = +3

Query: 183  LQKAWRRQRKQEKLDQETETGQELEAFTAPAVEGPVEISPHGRTGEIAHDESTSDWQ--Q 356
            L+K +R  R+     +E    +  E  T  A E    IS H    E   DES+S +   +
Sbjct: 921  LKKTYRGARENRSSVKEDYVSESTER-TPDASEIDEHISEH----EENDDESSSVFSTGE 975

Query: 357  VKGETDPVDLTLGLMDDKNALEKLRQYHMYGNMT 458
            V       D    L+DD   L     Y+++GNM+
Sbjct: 976  VWVNCKFTDTDGSLLDDGTKLSDRSVYNLFGNMS 1009


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 17/67 (25%), Positives = 29/67 (43%)
 Frame = +3

Query: 144 RVYGDGERPERFNLQKAWRRQRKQEKLDQETETGQELEAFTAPAVEGPVEISPHGRTGEI 323
           R   +GE  E    +K  +   K+E+++++ E+            E PV+  P G   E 
Sbjct: 121 RAANEGEHNESVPAKKVKKNTVKEEEIEKDDESA---------TTETPVKEEPTGEETEA 171

Query: 324 AHDESTS 344
            H+E  S
Sbjct: 172 DHEEKAS 178


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 136 KFCMSCLISANISNIRSKE 80
           ++C+SC I A +  +RS+E
Sbjct: 72  QYCVSCAIHARVVRVRSRE 90


>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +3

Query: 153 GDGERPERFNLQKA--WRRQRKQEKLDQETETGQELEAFTAPAVEGPVEI-SPHGRTGEI 323
           GDG   +  ++ K   ++  RK++ + +     +   A T+   E   +I SPHG+  E+
Sbjct: 105 GDGSGTDSISVIKKSFFKSGRKKKDVPKSRNVSRSNGADTSVQREKLKDIFSPHGKEKEL 164

Query: 324 AHDEST 341
           AH + T
Sbjct: 165 AHIKKT 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,635,033
Number of Sequences: 5004
Number of extensions: 26878
Number of successful extensions: 101
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)