Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_P19
         (570 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0670 + 35434203-35434355,35436601-35436729,35436978-354384...    33   0.21 
06_03_0854 + 25400855-25403741,25406174-25407708                       29   3.4  
01_07_0306 + 42638683-42638990,42639074-42639314,42639935-426402...    29   3.4  

>03_06_0670 +
           35434203-35434355,35436601-35436729,35436978-35438409,
           35438524-35439014
          Length = 734

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
 Frame = +3

Query: 165 RPERFNLQKAWRRQRKQEKLDQETETGQELEAFTAPAVEGPVEISPHGR-TGEIAHDES 338
           +PE  N++KA R+ +K+EK++   E GQ   +   P +  P+  S +G  T ++ H +S
Sbjct: 608 KPEAINIEKAIRQHKKEEKINGNQE-GQ--RSSVEPRLHDPLVASENGAPTKKLPHPDS 663


>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/49 (24%), Positives = 20/49 (40%)
 Frame = +3

Query: 225 DQETETGQELEAFTAPAVEGPVEISPHGRTGEIAHDESTSDWQQVKGET 371
           DQ   +    E   +P VEG V + P           +  +W+++  ET
Sbjct: 73  DQVVSSSASAEVLVSPLVEGEVRVVPAVERRRWRRQAAAEEWEEIDPET 121


>01_07_0306 +
           42638683-42638990,42639074-42639314,42639935-42640236,
           42640431-42640607,42640853-42641617,42641697-42641791,
           42641889-42641951,42642047-42642135,42642229-42642324,
           42642457-42643104,42643596-42643628,42643838-42643912,
           42644442-42644603,42644604-42644674,42644758-42644815,
           42645196-42645394,42645487-42645552,42645699-42646183
          Length = 1310

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +3

Query: 159 GERPERFNLQKAWRRQRKQEKLDQETETGQELEAFTAPAVEGPVEISPHG 308
           G+RP++ +  +           D+    G  L+A   PAVE P  + P G
Sbjct: 426 GQRPQKMSRTRRANVVSPVSNFDEGLSEGSPLDAAVRPAVESPGLLLPRG 475


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,403,328
Number of Sequences: 37544
Number of extensions: 199475
Number of successful extensions: 573
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)