Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_P19
         (570 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040640-1|AAD34652.1|  602|Caenorhabditis elegans Hypothetical ...    33   0.14 
Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical pr...    31   0.58 
Z75954-6|CAJ55257.1| 1145|Caenorhabditis elegans Hypothetical pr...    31   0.58 
Z75954-5|CAB00104.1| 1143|Caenorhabditis elegans Hypothetical pr...    31   0.58 
Z74046-1|CAA98556.2|  178|Caenorhabditis elegans Hypothetical pr...    31   0.77 
U40959-2|AAA81766.1|  413|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF045641-1|AAK68386.1|  970|Caenorhabditis elegans Hypothetical ...    29   3.1  
AC024753-1|AAF60456.1|  732|Caenorhabditis elegans Hypothetical ...    27   7.2  
U28738-2|AAA68309.4|  982|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>AF040640-1|AAD34652.1|  602|Caenorhabditis elegans Hypothetical
           protein F09D1.1 protein.
          Length = 602

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = +3

Query: 189 KAWRRQRKQEKLDQETETGQELEAFTAPAVEGPVEISPHGRTGEIAHDESTSDWQQVKGE 368
           K  RR +K+EK +QE E G E+   T PA E P +++      +   +E     +  + +
Sbjct: 59  KRSRRDKKEEKQEQEEEDG-EIRDTTPPAPEKPRQLTARELERQRIIEEELKSGKHDEHD 117

Query: 369 TDPV 380
            DPV
Sbjct: 118 DDPV 121


>Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical protein
            F33H2.5 protein.
          Length = 2144

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +3

Query: 183  LQKAWRRQRKQEKLDQETETGQELEAFTAPAVEGPVEISPHGRTGEIAHDESTSD-WQQV 359
            L+K WR QRK+ K    ++    +EA    A E   +   H  + E   D S  + W  V
Sbjct: 1245 LKKKWRVQRKERKTQLSSKDSDVVEAIVRGAREAEHDKEWHILSVEPTADASFFNVWLAV 1304

Query: 360  KGETDPVDLTLG 395
            +G+   V + +G
Sbjct: 1305 QGQMHKVIMKIG 1316


>Z75954-6|CAJ55257.1| 1145|Caenorhabditis elegans Hypothetical
           protein F58H1.1b protein.
          Length = 1145

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 21/73 (28%), Positives = 30/73 (41%)
 Frame = +3

Query: 111 DIRHDIQNLELRVYGDGERPERFNLQKAWRRQRKQEKLDQETETGQELEAFTAPAVEGPV 290
           D+R  I NLE     +G   +R   +    +  K    D+E E  +E E         PV
Sbjct: 42  DLRRKIGNLEHVAEENGRTIDRLEQEVQRAKAEKSVDFDEEKEKTEEKEVEKEEKEVAPV 101

Query: 291 EISPHGRTGEIAH 329
            +   G  GE+AH
Sbjct: 102 PV--RGNRGEMAH 112


>Z75954-5|CAB00104.1| 1143|Caenorhabditis elegans Hypothetical
           protein F58H1.1a protein.
          Length = 1143

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 21/73 (28%), Positives = 30/73 (41%)
 Frame = +3

Query: 111 DIRHDIQNLELRVYGDGERPERFNLQKAWRRQRKQEKLDQETETGQELEAFTAPAVEGPV 290
           D+R  I NLE     +G   +R   +    +  K    D+E E  +E E         PV
Sbjct: 40  DLRRKIGNLEHVAEENGRTIDRLEQEVQRAKAEKSVDFDEEKEKTEEKEVEKEEKEVAPV 99

Query: 291 EISPHGRTGEIAH 329
            +   G  GE+AH
Sbjct: 100 PV--RGNRGEMAH 110


>Z74046-1|CAA98556.2|  178|Caenorhabditis elegans Hypothetical
           protein ZC116.1 protein.
          Length = 178

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 15/67 (22%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
 Frame = +3

Query: 162 ERPERFNLQKAWRRQRKQEKLDQETETGQELEA--FTAPAVEGPVEISPHGRTGEIAHDE 335
           ++P++        +Q++Q+   Q+T+ GQ+ +   +     + PV+    G T ++ +D+
Sbjct: 61  QQPQQNQQYAQGTQQQQQQYYPQQTQQGQQQQTLQYQQGVQQQPVQYDQSGNTQQVQYDQ 120

Query: 336 STSDWQQ 356
           S+   QQ
Sbjct: 121 SSQMQQQ 127


>U40959-2|AAA81766.1|  413|Caenorhabditis elegans Hypothetical
           protein B0310.2 protein.
          Length = 413

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 234 TETGQELEAFTAPAVEGPVEISPHGRTGEIAHDESTS 344
           TE+  E       + EG +E+SP   TG+I  +ES+S
Sbjct: 248 TESDAEDIKIDVESDEGEIEVSPSPSTGDITENESSS 284


>AF045641-1|AAK68386.1|  970|Caenorhabditis elegans Hypothetical
           protein F53H1.1 protein.
          Length = 970

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 159 GERPERFNLQKAWRRQRKQEKLDQETETGQE 251
           G    R N++K WR Q+K+E+LD ++E   E
Sbjct: 101 GVERRRRNVEK-WRAQKKKEELDLQSEQSDE 130


>AC024753-1|AAF60456.1|  732|Caenorhabditis elegans Hypothetical
           protein Y23H5B.6 protein.
          Length = 732

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 153 GDGERPERFNLQKAWRRQRKQEKLDQETETGQELEA 260
           GD E  +RF   K  R QR+QEKL ++    +E EA
Sbjct: 652 GDKEDRKRF---KLLREQRRQEKLAKKNRRAEEEEA 684


>U28738-2|AAA68309.4|  982|Caenorhabditis elegans Hypothetical protein
            T28D9.7 protein.
          Length = 982

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 123  DIQNLELRVYGDGERPERFNLQKAWRRQRKQEKLDQETE 239
            D + + +  + D   P  F      RR RK++K+D+E +
Sbjct: 938  DTEPISVSEFSDALAPPLFKTPPRERRTRKEQKIDEEDD 976


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,124,991
Number of Sequences: 27780
Number of extensions: 153721
Number of successful extensions: 551
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)