Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_P18
(644 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 233 1e-61
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 227 6e-60
06_02_0103 - 11829343-11829699,11831560-11831826,11832239-118325... 30 1.8
03_01_0548 + 4099386-4099847,4100435-4101316 28 7.3
03_01_0547 + 4093196-4093657,4094267-4095148 28 7.3
03_01_0544 + 4082528-4082989,4083585-4084466 28 7.3
03_01_0543 + 4076981-4077442,4078145-4079026 28 7.3
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201... 27 9.7
07_03_0865 + 22130880-22130921,22131938-22132170,22132268-221323... 27 9.7
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 233 bits (569), Expect = 1e-61
Identities = 111/140 (79%), Positives = 125/140 (89%), Gaps = 1/140 (0%)
Frame = +2
Query: 227 EIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTN 403
E+KLF RWS DVQV+D+SL DY++V K+A YLPH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 10 EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTN 69
Query: 404 SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTV 583
SLMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V AIINSGPRED+TRIG AG V
Sbjct: 70 SLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAV 129
Query: 584 RRQAVDVSPLRRVNQAIWLL 643
RRQAVD+SPLRRVNQAI+LL
Sbjct: 130 RRQAVDISPLRRVNQAIYLL 149
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 227 bits (555), Expect = 6e-60
Identities = 108/139 (77%), Positives = 123/139 (88%), Gaps = 1/139 (0%)
Frame = +2
Query: 230 IKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNS 406
+KLF WS DVQV+D+SL DY++V K+A YLPH+AGRY+ KRFRKAQCP+VERLTNS
Sbjct: 12 VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNS 71
Query: 407 LMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVR 586
LMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V AIINSGPRED+TRIG AG VR
Sbjct: 72 LMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVR 131
Query: 587 RQAVDVSPLRRVNQAIWLL 643
RQAVD+SPLRRVNQAI+LL
Sbjct: 132 RQAVDISPLRRVNQAIYLL 150
>06_02_0103 -
11829343-11829699,11831560-11831826,11832239-11832559,
11833783-11833844,11835413-11835446,11835539-11835619
Length = 373
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +2
Query: 158 EEVADAGGMVVDNMPLPQPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLP 331
+E+ G MVV L + +D P+ +L W+ +SDM+L+ IS ++ + Y+P
Sbjct: 214 QEIVPGGRMVVSL--LVKRSDKPDTELIQPWTPAVTALSDMALRGVISKEKLDSFYIP 269
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 27.9 bits (59), Expect = 7.3
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 196 VVHNHAARVGDFFGPVLLSHISHL 125
++ NH ++G+ + PVL H SH+
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHI 356
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 27.9 bits (59), Expect = 7.3
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 196 VVHNHAARVGDFFGPVLLSHISHL 125
++ NH ++G+ + PVL H SH+
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHI 356
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 27.9 bits (59), Expect = 7.3
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 196 VVHNHAARVGDFFGPVLLSHISHL 125
++ NH ++G+ + PVL H SH+
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHI 356
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 27.9 bits (59), Expect = 7.3
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 196 VVHNHAARVGDFFGPVLLSHISHL 125
++ NH ++G+ + PVL H SH+
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHI 356
>07_03_1503 + 27017933-27018063,27019668-27019727,27019996-27020101,
27020254-27020325,27021008-27021061,27021707-27021856,
27022206-27022547,27022651-27024684,27024706-27024947,
27025658-27026235,27026329-27028183,27028533-27028851,
27028980-27029417
Length = 2126
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 386 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTG 496
+ L ++HG N ++++AV +K +I+HLL G
Sbjct: 1328 ISALVVGSVIHGVVNIERMVAVLKIKDGLDILHLLRG 1364
>07_03_0865 +
22130880-22130921,22131938-22132170,22132268-22132385,
22132474-22132656,22132859-22132960
Length = 225
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +1
Query: 262 RSSIGHVFAGLYFGKREVCKIFTTFCWQVRSQTIP*SSVPYCG 390
R+S+G GL FG+ V + TT Q S +IP VP G
Sbjct: 19 RASLGKPVKGLGFGRERVPRTATTITCQAAS-SIPADRVPDMG 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,280,831
Number of Sequences: 37544
Number of extensions: 360398
Number of successful extensions: 842
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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