Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_P18
(644 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68751-1|CAA92971.1| 210|Caenorhabditis elegans Hypothetical pr... 248 2e-66
U58750-3|AAB00643.2| 350|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z73971-9|CAH04730.1| 522|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z73971-8|CAA98250.1| 488|Caenorhabditis elegans Hypothetical pr... 29 3.7
AY532645-1|AAS21318.1| 522|Caenorhabditis elegans egg laying de... 29 3.7
L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell l... 28 4.9
AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein. 28 4.9
Z98851-5|CAB11541.1| 596|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z98851-4|CAB11542.1| 607|Caenorhabditis elegans Hypothetical pr... 27 8.6
>Z68751-1|CAA92971.1| 210|Caenorhabditis elegans Hypothetical
protein T05E11.1 protein.
Length = 210
Score = 248 bits (608), Expect = 2e-66
Identities = 123/166 (74%), Positives = 135/166 (81%)
Frame = +2
Query: 146 ENWTEEVADAGGMVVDNMPLPQPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKY 325
+NW E +V D P + PE+ LFG+WS V VSD+SL DYI VKEK AKY
Sbjct: 3 DNWGSE-----NVVADAAPA---TEAPEVALFGKWSLQSVNVSDISLVDYIPVKEKSAKY 54
Query: 326 LPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENP 505
LPHSAGR+ +RFRKA CPIVERL NSLMMHGRNNGKKLM VRIVKHAFEII+LLTGENP
Sbjct: 55 LPHSAGRFQVRRFRKAACPIVERLANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENP 114
Query: 506 LQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLL 643
+QVLV A+INSGPREDSTRIGRAGTVRRQAVDV+PLRRVNQAIWLL
Sbjct: 115 VQVLVNAVINSGPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLL 160
>U58750-3|AAB00643.2| 350|Caenorhabditis elegans Hypothetical
protein F55G1.6 protein.
Length = 350
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 231 SNFLGDGVVMTFKYRTCLCRIIF 299
SN+L DG V+ +K + C CR +F
Sbjct: 124 SNYLEDGDVLGYKLKPCFCRKLF 146
>Z73971-9|CAH04730.1| 522|Caenorhabditis elegans Hypothetical
protein C50H2.2a protein.
Length = 522
Score = 28.7 bits (61), Expect = 3.7
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -2
Query: 361 SFVSVPASRMW*IFCILLFY-RNIILQRHVRYLNVITTPSPKKFDFGNISRLW*WHVVHN 185
SF+ VP +W I +L ++ NI+++ + R L KK F + + N
Sbjct: 275 SFILVPVLSLWNIIPLLYYHLYNILVRFYCRTLIKSMNREHKKRHFSLKFYYEQFTRITN 334
Query: 184 HAARVGDFFGPVLL 143
VGD F P+LL
Sbjct: 335 VQEAVGDVFNPLLL 348
>Z73971-8|CAA98250.1| 488|Caenorhabditis elegans Hypothetical
protein C50H2.2b protein.
Length = 488
Score = 28.7 bits (61), Expect = 3.7
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -2
Query: 361 SFVSVPASRMW*IFCILLFY-RNIILQRHVRYLNVITTPSPKKFDFGNISRLW*WHVVHN 185
SF+ VP +W I +L ++ NI+++ + R L KK F + + N
Sbjct: 241 SFILVPVLSLWNIIPLLYYHLYNILVRFYCRTLIKSMNREHKKRHFSLKFYYEQFTRITN 300
Query: 184 HAARVGDFFGPVLL 143
VGD F P+LL
Sbjct: 301 VQEAVGDVFNPLLL 314
>AY532645-1|AAS21318.1| 522|Caenorhabditis elegans egg laying
defective EGL-47A protein.
Length = 522
Score = 28.7 bits (61), Expect = 3.7
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -2
Query: 361 SFVSVPASRMW*IFCILLFY-RNIILQRHVRYLNVITTPSPKKFDFGNISRLW*WHVVHN 185
SF+ VP +W I +L ++ NI+++ + R L KK F + + N
Sbjct: 275 SFILVPVLSLWNIIPLLYYHLYNILVRFYCRTLIKSMNREHKKRHFSLKFYYEQFTRITN 334
Query: 184 HAARVGDFFGPVLL 143
VGD F P+LL
Sbjct: 335 VQEAVGDVFNPLLL 348
>L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell
lineage protein 36 protein.
Length = 962
Score = 28.3 bits (60), Expect = 4.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 147 RTGPKKSPTRAAWLWTTCHYHS 212
+T P K +R W+ T C +HS
Sbjct: 254 KTTPSKKSSRVPWVCTVCEFHS 275
>AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein.
Length = 962
Score = 28.3 bits (60), Expect = 4.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 147 RTGPKKSPTRAAWLWTTCHYHS 212
+T P K +R W+ T C +HS
Sbjct: 254 KTTPSKKSSRVPWVCTVCEFHS 275
>Z98851-5|CAB11541.1| 596|Caenorhabditis elegans Hypothetical
protein H12I19.5b protein.
Length = 596
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -2
Query: 370 FTESFVSVPASRMW*IFCILLFYRNIILQRHVRYLNVITTP 248
F + ++ +P ++ I CI LF N+IL + R +++T P
Sbjct: 341 FEKKYLRLPDRQITKI-CIFLFLTNVILLEYPRVEDILTAP 380
>Z98851-4|CAB11542.1| 607|Caenorhabditis elegans Hypothetical
protein H12I19.5a protein.
Length = 607
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -2
Query: 370 FTESFVSVPASRMW*IFCILLFYRNIILQRHVRYLNVITTP 248
F + ++ +P ++ I CI LF N+IL + R +++T P
Sbjct: 341 FEKKYLRLPDRQITKI-CIFLFLTNVILLEYPRVEDILTAP 380
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,009,689
Number of Sequences: 27780
Number of extensions: 321000
Number of successful extensions: 715
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -