Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_P17
(584 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein S14|Sc... 174 9e-45
SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein S14|Schizosa... 174 9e-45
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn... 34 0.013
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 28 1.2
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 27 1.5
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 25 6.2
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3... 25 6.2
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 25 8.1
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 8.1
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 25 8.1
>SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein
S14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 174 bits (423), Expect = 9e-45
Identities = 82/124 (66%), Positives = 94/124 (75%)
Frame = +3
Query: 48 LGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAALL 227
+GPQ GE+VFGVAHIFASFNDTFVH+TDL+G+ETI RVTGGMKVK DRDE+SPYAA+L
Sbjct: 5 VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAML 64
Query: 228 AAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 407
AAQD A KCK +GITALHIK+RA AQ M+IGRIEDVTP+P
Sbjct: 65 AAQDAAAKCKEVGITALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPIP 124
Query: 408 SDST 419
+DST
Sbjct: 125 TDST 128
>SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein
S14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 174 bits (423), Expect = 9e-45
Identities = 82/124 (66%), Positives = 94/124 (75%)
Frame = +3
Query: 48 LGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAALL 227
+GPQ GE+VFGVAHIFASFNDTFVH+TDL+G+ETI RVTGGMKVK DRDE+SPYAA+L
Sbjct: 5 VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAML 64
Query: 228 AAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 407
AAQD A KCK +GITALHIK+RA AQ M+IGRIEDVTP+P
Sbjct: 65 AAQDAAAKCKEVGITALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPIP 124
Query: 408 SDST 419
+DST
Sbjct: 125 TDST 128
>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 534
Score = 34.3 bits (75), Expect = 0.013
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 582 NRFNSKSKCNARTYSYTLPTYVFEP 508
N FN ++ C +R Y Y +PTY F P
Sbjct: 146 NSFNPRTYCESRIYEYMVPTYAFVP 170
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 27.9 bits (59), Expect = 1.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 236 GCC*EM*NPGDNCP 277
GCC + +PGDNCP
Sbjct: 33 GCCPQCTSPGDNCP 46
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 27.5 bits (58), Expect = 1.5
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 150 ETIARVTGGMKVKADRDEASPYAALLAAQDVAEK 251
ET+ V G +KV + + + Y A +AAQ V EK
Sbjct: 347 ETLKAVLGEIKVPTNEEVIAKYVANIAAQLVEEK 380
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 25.4 bits (53), Expect = 6.2
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Frame = -1
Query: 188 LHFHASGNTGNSFSTGQIGNVHE-----CVIEGGEYVCHPEYYLTHQ 63
LH HA T +SFST + E ++E V H YL +Q
Sbjct: 433 LHRHAHSLTSSSFSTKTLATTKEIQNSPTLVESSTVVHHDPSYLQNQ 479
>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 555
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -1
Query: 98 YVCHPEYYL-THQVLGTKSHLNLLFC 24
YVC PEY++ H V T++H ++ C
Sbjct: 307 YVCSPEYHMFAHPV--TQNHYMVMLC 330
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 576 FNSKSKCNARTYSYTLPTYVFEPSLWKLLYSKSTV 472
+N KSK N RT++ + F + K++Y K+ +
Sbjct: 21 YNGKSKSNGRTFAKSTEEVGFNDPM-KIVYKKNEI 54
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 237 PVQPTERRRVKPHHDQPSLS 178
P+QP E+R VKP +P L+
Sbjct: 345 PLQPWEKRSVKPEIRRPRLN 364
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 164 TGNSFSTGQIGNVHECVIEGGEYV 93
T FS Q +HEC+++ G YV
Sbjct: 469 TKRLFSLLQSETIHECLVKAGGYV 492
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,102
Number of Sequences: 5004
Number of extensions: 47976
Number of successful extensions: 126
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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