Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_P17
(584 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0871 - 20441689-20441756,20442220-20442349,20442422-204425... 187 5e-48
02_04_0100 - 19730137-19730237,19731215-19731344,19731419-197315... 175 3e-44
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335... 166 1e-41
02_01_0045 + 307058-307552,308670-308716,308779-308866,309664-30... 49 3e-06
02_05_0250 + 27153048-27154453,27154546-27154885 33 0.22
09_02_0373 - 8098060-8098229,8098316-8098375,8098486-8098674,809... 30 1.6
04_01_0296 + 3927741-3927960,3928257-3928900 28 6.3
>04_03_0871 -
20441689-20441756,20442220-20442349,20442422-20442507,
20444271-20444316,20444425-20444547,20445302-20445370
Length = 173
Score = 187 bits (456), Expect = 5e-48
Identities = 93/138 (67%), Positives = 104/138 (75%)
Frame = +3
Query: 6 RRKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKV 185
R+K + KEE VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKV
Sbjct: 26 RKKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 84
Query: 186 KADRDEASPYAALLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXX 365
KADRDE+SPYAA+LA+QDVA++CK LGITALHIKLRA AQ
Sbjct: 85 KADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 144
Query: 366 XMKIGRIEDVTPVPSDST 419
MKIGRIEDVTPVP+DST
Sbjct: 145 GMKIGRIEDVTPVPTDST 162
>02_04_0100 -
19730137-19730237,19731215-19731344,19731419-19731504,
19732410-19732455,19732558-19732680,19732779-19732781
Length = 162
Score = 175 bits (425), Expect = 3e-44
Identities = 93/149 (62%), Positives = 104/149 (69%), Gaps = 11/149 (7%)
Frame = +3
Query: 6 RRKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKV 185
R+K + KEE VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKV
Sbjct: 4 RKKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 62
Query: 186 KADRDEASPYAALLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXX 365
KADRDE+SPYAA+LA+QDVA++CK LGITALHIKLRA AQ
Sbjct: 63 KADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 122
Query: 366 XMKIGRI-----------EDVTPVPSDST 419
MKIGRI EDVTPVP+DST
Sbjct: 123 GMKIGRIADDVLSIFCHTEDVTPVPTDST 151
>02_01_0469 -
3359156-3359500,3359595-3359680,3359766-3359811,
3359897-3360016,3360622-3360624
Length = 199
Score = 166 bits (403), Expect = 1e-41
Identities = 83/128 (64%), Positives = 94/128 (73%)
Frame = +3
Query: 3 TRRKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMK 182
++RK + KEE VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMK
Sbjct: 2 SKRKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60
Query: 183 VKADRDEASPYAALLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXX 362
VKADRDE+SPYAA+LA+QDVA++CK LGITALHIKLRA AQ
Sbjct: 61 VKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120
Query: 363 XXMKIGRI 386
MKIGRI
Sbjct: 121 SGMKIGRI 128
>02_01_0045 +
307058-307552,308670-308716,308779-308866,309664-309756,
309788-309950,310554-310627,310889-310927
Length = 332
Score = 48.8 bits (111), Expect = 3e-06
Identities = 22/31 (70%), Positives = 26/31 (83%)
Frame = +3
Query: 165 VTGGMKVKADRDEASPYAALLAAQDVAEKCK 257
V GGMK+KAD DE+SPYAA+L +QDVA CK
Sbjct: 211 VGGGMKIKADCDESSPYAAMLVSQDVALCCK 241
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 165 VTGGMKVKADRDEASPYAALLAAQDVA 245
V GGM +K+D DE SP+ + + D++
Sbjct: 166 VGGGMNIKSDCDEPSPHCSCVGQTDIS 192
>02_05_0250 + 27153048-27154453,27154546-27154885
Length = 581
Score = 32.7 bits (71), Expect = 0.22
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 582 NRFNSKSKCNARTYSYTLPTYVFEPS 505
N FN+K C+ R Y Y LP + +PS
Sbjct: 151 NSFNAKKFCDRRRYVYLLPVFALDPS 176
>09_02_0373 -
8098060-8098229,8098316-8098375,8098486-8098674,
8098994-8099108,8099374-8099427,8099600-8099709,
8099792-8099879,8099969-8100181
Length = 332
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -1
Query: 248 LSNILCSQQSGVG*SLITISLHFHASGNTGNSFSTGQIGNVHECVIEGGEYVCHPEYY-L 72
L NI+ VG ++T L + GNT ++ IG V C I GG Y +Y L
Sbjct: 37 LLNIIEPFHRFVGRDMMT-DLRYPLKGNTVPFWAVPLIGIVLPCAIFGGIYFKKKNFYDL 95
Query: 71 THQVLG 54
H +LG
Sbjct: 96 HHGILG 101
>04_01_0296 + 3927741-3927960,3928257-3928900
Length = 287
Score = 27.9 bits (59), Expect = 6.3
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -1
Query: 461 KKLQPASSSSTLPAC--GVRRHRGHIFNAANLHAGTSESTESRLGTRSRSLCLVTSSRTE 288
+K + SSSST C V R G + LHA TSES ++ R+ + L+T S +
Sbjct: 215 RKEREGSSSSTPCRCMRQVGRQLGMRPDGPKLHATTSESQAGQVPVRTGGVHLMTYSGGQ 274
Query: 287 LNVQ 276
+Q
Sbjct: 275 PTLQ 278
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,016,739
Number of Sequences: 37544
Number of extensions: 365325
Number of successful extensions: 1179
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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