Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_P17
         (584 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal prote...   190   6e-49
AL021572-2|CAA16518.1|  415|Caenorhabditis elegans Hypothetical ...    33   0.15 
Z81125-4|CAB03383.3|  594|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U23448-3|AAO26017.1|  612|Caenorhabditis elegans Egg laying defe...    27   7.4  
U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defe...    27   7.4  
U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defe...    27   7.4  
AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein.     27   7.4  
AL031627-1|CAA20945.1|  550|Caenorhabditis elegans Hypothetical ...    27   9.8  
AF125954-3|AAD14706.3|  323|Caenorhabditis elegans Serpentine re...    27   9.8  
AF016688-9|AAN65322.1|  816|Caenorhabditis elegans Hypothetical ...    27   9.8  
AF016688-8|AAB66079.2|  848|Caenorhabditis elegans Hypothetical ...    27   9.8  
AC006769-4|AAF60584.1|  323|Caenorhabditis elegans Hypothetical ...    27   9.8  

>U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 14 protein.
          Length = 152

 Score =  190 bits (463), Expect = 6e-49
 Identities = 91/137 (66%), Positives = 103/137 (75%)
 Frame = +3

Query: 9   RKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVK 188
           RK K  +E+  V+LGPQ   GE++FGVAHIFASFNDTFVH+TD+SGRETI RVTGGMKVK
Sbjct: 5   RKGKAKEEQAVVSLGPQAKEGELIFGVAHIFASFNDTFVHITDISGRETIVRVTGGMKVK 64

Query: 189 ADRDEASPYAALLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXX 368
           ADRDE+SPYAA+LAAQDVA++CK LGI ALHIKLRA            AQ          
Sbjct: 65  ADRDESSPYAAMLAAQDVADRCKQLGINALHIKLRATGGTRTKTPGPGAQSALRALARAG 124

Query: 369 MKIGRIEDVTPVPSDST 419
           MKIGRIEDVTP+PSD T
Sbjct: 125 MKIGRIEDVTPIPSDCT 141


>AL021572-2|CAA16518.1|  415|Caenorhabditis elegans Hypothetical
           protein W06H3.2 protein.
          Length = 415

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = -3

Query: 582 NRFNSKSKCNARTYSYTLPTYVF 514
           N F+ + +C+ RTYSYT P++VF
Sbjct: 139 NFFHPQKQCDHRTYSYTCPSFVF 161


>Z81125-4|CAB03383.3|  594|Caenorhabditis elegans Hypothetical
           protein T22A3.6 protein.
          Length = 594

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 350 TESRLGTRSRSLCLVTSSRTELNVQGSYPQGFTFLSNILCSQ 225
           TESRL   + + C++ + R  + V+ SY +   F +  L S+
Sbjct: 487 TESRLFMNTEASCMLLNRRNSVEVKNSYKESPFFTNEKLVSE 528


>U23448-3|AAO26017.1|  612|Caenorhabditis elegans Egg laying
           defective protein 27,isoform c protein.
          Length = 612

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 360 EREHGEQTGHQVQESLSCYLQSHGA*CAGQLSP 262
           ERE   Q   Q Q++L    Q H A  A QL+P
Sbjct: 408 ERERERQHQQQAQQALHQQQQQHAAAAANQLNP 440


>U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defective
            protein 27,isoform b protein.
          Length = 1124

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 360  EREHGEQTGHQVQESLSCYLQSHGA*CAGQLSP 262
            ERE   Q   Q Q++L    Q H A  A QL+P
Sbjct: 920  ERERERQHQQQAQQALHQQQQQHAAAAANQLNP 952


>U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defective
            protein 27,isoform a protein.
          Length = 1129

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 360  EREHGEQTGHQVQESLSCYLQSHGA*CAGQLSP 262
            ERE   Q   Q Q++L    Q H A  A QL+P
Sbjct: 925  ERERERQHQQQAQQALHQQQQQHAAAAANQLNP 957


>AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein.
          Length = 1129

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 360  EREHGEQTGHQVQESLSCYLQSHGA*CAGQLSP 262
            ERE   Q   Q Q++L    Q H A  A QL+P
Sbjct: 925  ERERERQHQQQAQQALHQQQQQHAAAAANQLNP 957


>AL031627-1|CAA20945.1|  550|Caenorhabditis elegans Hypothetical
           protein Y102A5C.4 protein.
          Length = 550

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +3

Query: 6   RRKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDT--FVHVTDLSGR 149
           +RK ++  E+VQ TLG    VGE V  +A   A  N T  FV +++  G+
Sbjct: 19  KRKCQLISEDVQQTLGSLTNVGEYVIELADNVAPTNLTRKFVVLSNTIGK 68


>AF125954-3|AAD14706.3|  323|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 71 protein.
          Length = 323

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 311 LVTSSRTELNVQGSYPQGFTFLSNILCSQQSGV 213
           LVT+    +++Q     GF+ ++NILCS  +G+
Sbjct: 159 LVTTFYPTIDLQNYTLSGFSDVTNILCSTATGI 191


>AF016688-9|AAN65322.1|  816|Caenorhabditis elegans Hypothetical
           protein F18A12.8b protein.
          Length = 816

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -2

Query: 178 MPPVTRAIVSRPDRSVTCTNVSLKEANMCATPNTI 74
           +PP+     + P+  VT +    KE  +C+TP  +
Sbjct: 133 VPPIVPEAPTSPEPEVTTSTEKPKEPEVCSTPGCV 167


>AF016688-8|AAB66079.2|  848|Caenorhabditis elegans Hypothetical
           protein F18A12.8a protein.
          Length = 848

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -2

Query: 178 MPPVTRAIVSRPDRSVTCTNVSLKEANMCATPNTI 74
           +PP+     + P+  VT +    KE  +C+TP  +
Sbjct: 133 VPPIVPEAPTSPEPEVTTSTEKPKEPEVCSTPGCV 167


>AC006769-4|AAF60584.1|  323|Caenorhabditis elegans Hypothetical
           protein Y45G12C.9 protein.
          Length = 323

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 311 LVTSSRTELNVQGSYPQGFTFLSNILCSQQSGV 213
           LVT+    +++Q     GF+ ++NILCS  +G+
Sbjct: 159 LVTTFYPTIDLQNYTLSGFSDVTNILCSTATGI 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,986,844
Number of Sequences: 27780
Number of extensions: 294480
Number of successful extensions: 840
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)