Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_P16
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    36   0.006
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    27   1.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.0  
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    27   2.0  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.0  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    27   2.6  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    25   8.1  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    25   8.1  

>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 35.5 bits (78), Expect = 0.006
 Identities = 31/88 (35%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
 Frame = +3

Query: 246 RCGVSKENLKNLPFHLLKLY----EPH-QCALCGHSFESFTTSRMHYLSKNHAKNQKKWF 410
           RC   KENL+NL  +LL L+     PH  C L     E     R   LS N   N++  F
Sbjct: 86  RCLSDKENLENLQ-NLLYLHCDLNRPHLSCELPSEHREKCLKRRNSSLSSNLHANKRFLF 144

Query: 411 SKQSDGGLRAKEIPIK--SRDLYCELCD 488
           + QSDG  + +  P    S   Y   CD
Sbjct: 145 NSQSDGNKKNETFPSTNYSNVFYPNNCD 172


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 420 SDGGLRAKEIPIKSRDLYCELCDVHITSKTHAESHYAGKPHR 545
           SD    +KEI + S  + C +C+ +  S+   E+H   K H+
Sbjct: 255 SDDESLSKEI-VNSNPIMCMVCNKNFRSQNQLENHENSKKHK 295


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 450 PIKSRDLYCELCDVHITSKTHAESHYAGKPHRSIVEGRKNAK 575
           P+K R  Y +L   H+ +K H  +H     +RS++   KN K
Sbjct: 463 PVKVRVSYQKLLKSHVMNKLHM-AHPKSHTNRSLLRQLKNTK 503


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +3

Query: 405 WFSKQSDGGLRAKEIPIKSRDLYCELCDVHITSKTHAESHYAGKPHRSIVEGRKNAKNP 581
           W+S  ++     K+    +   YCE+C       T  E+H   K H   V+ R  + +P
Sbjct: 225 WYSHNAEAEKDGKD---STEAFYCEVCQKFFGKITVFEAHKKSKAHNKAVK-RMQSSSP 279


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 465 DLYCELCDVHITSKTHAESHYAG 533
           DL C+L D+H  S  H  ++YAG
Sbjct: 213 DLPCKLIDLHNDSFLHHSNYYAG 235


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 177 GFG-PRGPPMRKSPVEEKALRYLRRCGVSKENLKNLPFHLLKLYEPHQCALCGHSFE 344
           GFG P+G  +  S   E A   LR   +S E+ +NL   +  +Y+  +  + GH +E
Sbjct: 710 GFGKPKGHAVDASVCVEVAAP-LRDANLSAESSRNLSRIITPIYDDEEGNVSGHIYE 765


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/55 (21%), Positives = 24/55 (43%)
 Frame = +3

Query: 264 ENLKNLPFHLLKLYEPHQCALCGHSFESFTTSRMHYLSKNHAKNQKKWFSKQSDG 428
           E    L  H+ + + P  C++CG  F++    R H +       ++K +    +G
Sbjct: 189 EKWSQLQNHIREAHVP-SCSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEG 242


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 426 HQTVWKTIFSGSSHDF 379
           H  VWKTI S +S+D+
Sbjct: 616 HTVVWKTISSWTSYDY 631


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,984,088
Number of Sequences: 5004
Number of extensions: 37932
Number of successful extensions: 102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)