Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_P16
(582 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393 35 0.054
09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351 34 0.072
08_01_1026 - 10366534-10368021,10368505-10368525 32 0.29
09_04_0154 - 15180921-15181811,15181986-15182070,15182205-15182419 31 0.51
09_06_0357 + 22502660-22502876,22503433-22504577 30 1.2
08_01_0904 - 8916550-8917730,8917762-8918534,8919200-8920029 29 3.6
06_03_0953 - 26277946-26278800,26280177-26280676,26280735-26280849 28 4.7
01_05_0484 - 22621614-22621676,22621798-22621911,22622006-226224... 28 4.7
10_05_0043 + 8503979-8504407,8506484-8506624,8506865-8506975,850... 28 6.2
09_06_0270 + 21954652-21955245,21955827-21955964,21956050-219562... 28 6.2
08_02_1617 - 28265252-28265354,28266546-28266608,28266943-28267151 28 6.2
09_04_0155 - 15185985-15186755,15187049-15187236,15187479-151875... 27 8.2
>10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393
Length = 278
Score = 34.7 bits (76), Expect = 0.054
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 462 RDLYCELCDVHITSKTHAESHYAGKPH 542
+++ C+LCDV + S+ + HYAGK H
Sbjct: 226 KNVRCQLCDVLLASELNVAQHYAGKQH 252
Score = 32.3 bits (70), Expect = 0.29
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 468 LYCELCDVHITSKTHAESHYAGKPHRSIVEGRKNAKN 578
LYC +C+V ++ + H AG+ HR V KN
Sbjct: 191 LYCGVCNVKCMTRFNLREHEAGRKHRDKVASNAGEKN 227
>09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351
Length = 415
Score = 34.3 bits (75), Expect = 0.072
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 456 KSRDLYCELCDVHITSKTHAESHYAGKPHR 545
++R YC++C+V +S+ SH AGK HR
Sbjct: 378 QNRMYYCDICEVRCSSEKMMASHLAGKRHR 407
>08_01_1026 - 10366534-10368021,10368505-10368525
Length = 502
Score = 32.3 bits (70), Expect = 0.29
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 468 LYCELCDVHITSKTHAESHYAGKPHRSIVEGRKNAK 575
+ C++C+V S T SH AG+ H+S+ AK
Sbjct: 240 IICDVCNVKAPSVTVMRSHLAGRKHKSMAAATAKAK 275
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 468 LYCELCDVHITSKTHAESHYAGKPHRS 548
L C C+V TS++ H AGK HR+
Sbjct: 340 LGCASCNVMATSESGMRLHLAGKKHRN 366
>09_04_0154 - 15180921-15181811,15181986-15182070,15182205-15182419
Length = 396
Score = 31.5 bits (68), Expect = 0.51
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 474 CELCDVHITSKTHAESHYAGKPHRSIVEG 560
C +C+V +S+ + HY G+ H+S V G
Sbjct: 104 CAVCEVQTSSERNLRDHYGGQKHQSKVAG 132
Score = 28.3 bits (60), Expect = 4.7
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 17/92 (18%)
Frame = +3
Query: 318 CALCGHSFESFTTSRMHYLSKNHAKNQKK--WFSKQSD---------GGLRAKEIPI--- 455
C+LC + + H S H + + W +K+SD G +K + I
Sbjct: 295 CSLCQAKCNTESQLEHHRRSTRHQQKVESLGWNAKESDLGTLQGMSSDGSSSKSVKISAT 354
Query: 456 --KSRDLY-CELCDVHITSKTHAESHYAGKPH 542
K + Y CE+C + TS+ H +GK H
Sbjct: 355 MDKQKATYFCEVCSLKCTSQRMLADHLSGKKH 386
>09_06_0357 + 22502660-22502876,22503433-22504577
Length = 453
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 312 HQCALCGHSFESFTTSRMHYLSKNHAKNQKKW 407
H+CA+CG F + T + S H + +++W
Sbjct: 28 HECAVCGVEFSTITALTVILWSGEHEEERERW 59
>08_01_0904 - 8916550-8917730,8917762-8918534,8919200-8920029
Length = 927
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +3
Query: 189 RGPPMRKSPVEEKALRYLRRCGVSKENLKNLPFHLLKLYEPHQCALCGHSFE 344
RG +R P + K LRYL + + ++ LP +LKL P L G E
Sbjct: 601 RGTGVRLIPSKIKRLRYLETLDLRETEVEMLPLEVLKL--PRLAHLFGSKLE 650
>06_03_0953 - 26277946-26278800,26280177-26280676,26280735-26280849
Length = 489
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 417 QSDGGLRAKEIPIKSRDLYCELCDVHITSKTHAESHYAGKPHRSI 551
Q DG + E+ KS L+C+ C V + H GK H +
Sbjct: 319 QVDGAMH--EVVQKSNYLWCDRCKVRCDNNVTMADHLRGKKHSGL 361
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 459 SRDLYCELCDVHITSKTHAESHYAGKPHRS 548
++D C LC V TS+ H GK H++
Sbjct: 250 AQDWSCALCQVSATSEGALNEHLEGKRHKA 279
>01_05_0484 -
22621614-22621676,22621798-22621911,22622006-22622453,
22623052-22623179,22623747-22623821,22623954-22624040
Length = 304
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 471 YCELCDVHITSKTHAESHYAGKPHRS 548
+C LC TSK SH GK HR+
Sbjct: 95 FCSLCKTTTTSKQTLLSHADGKKHRA 120
>10_05_0043 +
8503979-8504407,8506484-8506624,8506865-8506975,
8507746-8508330
Length = 421
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 255 VSKENLKNLPFHLLKLYEPHQCALCGHSFESFTTSRMHYLSKNHAKNQKK 404
VS++++K P K+ +P C +C ++ R+H K H KN ++
Sbjct: 263 VSRKHIKKKP----KVVQPLTCEVCKIQCDTPEVLRIHKTGKKHKKNLER 308
>09_06_0270 +
21954652-21955245,21955827-21955964,21956050-21956295,
21956407-21956520,21956633-21956815,21956926-21957143,
21957210-21957246,21957865-21958219,21958284-21958337,
21958513-21958529
Length = 651
Score = 27.9 bits (59), Expect = 6.2
Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Frame = +3
Query: 231 LRYLRRCGVSKENLKNLPFHLLKLYEPHQCALCGHSFESFTTSRMHYLSKNHAKNQK--- 401
+ YL G+SK+N+ ++ + + P L G+S E ++ +L + K K
Sbjct: 517 INYLLDMGLSKKNVCSMIYR----FSP----LLGYSIELVMKPKLEFLLRTMKKPLKAVV 568
Query: 402 ---KWFSKQSDGGLRAKEIPIKSRDLYCELCDV 491
++FS +G ++ + ++SR + C L D+
Sbjct: 569 EYPRYFSYSLEGRIKPRFCVLQSRKIDCSLTDM 601
>08_02_1617 - 28265252-28265354,28266546-28266608,28266943-28267151
Length = 124
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 471 YCELCDVHITSKTHAESHYAGKPHRSIVE 557
YC CD + S++ E HY K H+ ++
Sbjct: 65 YCLHCDRYFASESVKEEHYRSKRHKKRIK 93
>09_04_0155 -
15185985-15186755,15187049-15187236,15187479-15187517,
15187741-15187768
Length = 341
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 441 KEIPIKSRDLYCELCDVHITSKTHAESHYAGKPHRSIVEGRKNAK 575
K + ++ L CE+C + S+ H GK H++ +E AK
Sbjct: 292 KHLKQENLQLSCEICKLQCNSEKVLSDHRYGKKHQAKLEKVLQAK 336
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,677,406
Number of Sequences: 37544
Number of extensions: 230460
Number of successful extensions: 584
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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