Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_P16
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    29   0.044
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   6.7  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   6.7  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   8.9  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 28.7 bits (61), Expect = 0.044
 Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 12/125 (9%)
 Frame = +3

Query: 216 VEEKALRYLR-RCGVSKENL--KNLPFHLLKLYEPHQCALCGHSFESFTTSRMHYLSKNH 386
           +EEK  + L  +    ++NL   +L  H  +  +P++C +CG +F        HY +   
Sbjct: 57  IEEKTYQCLLCQKAFDQKNLYQSHLRSHGKEGEDPYRCNICGKTFAVPARLTRHYRTHTG 116

Query: 387 AKNQK-----KWFSKQSDGGLRAKEIPIKSRDLYCELCD--VHITSKTHAES--HYAGKP 539
            K  +     K FS + +  +  + I  K R   C++C+     + K H     H   +P
Sbjct: 117 EKPYQCEYCSKSFSVKENLSVH-RRIHTKERPYKCDVCERAFEHSGKLHRHMRIHTGERP 175

Query: 540 HRSIV 554
           H+  V
Sbjct: 176 HKCTV 180



 Score = 27.1 bits (57), Expect = 0.13
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = +3

Query: 306 EPHQCALCGHSFESFTTSRMHYLSKNHAKNQKKWFSKQSDGGLRAKEIPIKS 461
           +P+ C +CG SF      ++H ++    K  K     ++ G  +  E+ IK+
Sbjct: 230 KPYTCDICGKSFGYNHVLKLHQVAHYGEKVYKCTLCHETFGSKKTMELHIKT 281


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +1

Query: 157 RLKCGAKDLVLEDHQ*ENHL 216
           ++ C A+ +VLE+ + ++HL
Sbjct: 224 KIFCAARRIVLEERRAQSHL 243


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 465 DLYCELCDVHITSKTHAE 518
           D YC  C +H  +  HA+
Sbjct: 540 DAYCVACGLHRDTYIHAQ 557


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 372 LSKNHAKNQKKWF 410
           L  NH  +Q KWF
Sbjct: 118 LVPNHTSDQHKWF 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,915
Number of Sequences: 438
Number of extensions: 2427
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)