Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_P15
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...   270   8e-74
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...   268   4e-73
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   3.5  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    25   6.2  
SPBC4B4.06 |vps25||ESCRT II complex subunit Vps25|Schizosaccharo...    25   6.2  

>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score =  270 bits (663), Expect = 8e-74
 Identities = 134/192 (69%), Positives = 147/192 (76%)
 Frame = +2

Query: 8   GRFNGTVEAVDGHLVVNGKKIAVFSERDPHAIPWGQAGAEYVVESTGVFTTTDKASAHLV 187
           GRF G+VE   G LV++G  I V +ERDP  I W  +GAEYV+ESTGVFTT + ASAHL 
Sbjct: 54  GRFEGSVETKGGKLVIDGHSIDVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLK 113

Query: 188 GGAKKVIISAPSADAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAKVIHDNFEIIEG 367
           GGAK+VIISAPS DAPMFVVGVNLE ++PS KVISNASCTTNCLAPLAKVI+D F I EG
Sbjct: 114 GGAKRVIISAPSKDAPMFVVGVNLEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEG 173

Query: 368 LMXXXXXXXXXXXXXDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPQLTGKLTGMAF 547
           LM             DGPS K WR GRGA  NIIP+STGAAKAVGKVIP L GKLTGMAF
Sbjct: 174 LMTTVHATTATQKTVDGPSKKDWRGGRGASANIIPSSTGAAKAVGKVIPALNGKLTGMAF 233

Query: 548 RVPVANVSVVDL 583
           RVP  +VSVVDL
Sbjct: 234 RVPTPDVSVVDL 245


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score =  268 bits (657), Expect = 4e-73
 Identities = 132/192 (68%), Positives = 148/192 (77%)
 Frame = +2

Query: 8   GRFNGTVEAVDGHLVVNGKKIAVFSERDPHAIPWGQAGAEYVVESTGVFTTTDKASAHLV 187
           GRF+G+VE  DG LV++G  I V +ERDP  I W  +GA+YV+ESTGVFTT + ASAHL 
Sbjct: 54  GRFDGSVEIKDGKLVIDGNAIDVHNERDPADIKWSTSGADYVIESTGVFTTQETASAHLK 113

Query: 188 GGAKKVIISAPSADAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAKVIHDNFEIIEG 367
           GGAK+VIISAPS DAPM+VVGVN E ++PS KVISNASCTTNCLAPLAKVI+D F I EG
Sbjct: 114 GGAKRVIISAPSKDAPMYVVGVNEEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEG 173

Query: 368 LMXXXXXXXXXXXXXDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPQLTGKLTGMAF 547
           LM             DGPS K WR GRGA  NIIP+STGAAKAVGKVIP L GKLTGMAF
Sbjct: 174 LMTTVHATTATQKTVDGPSKKDWRGGRGASANIIPSSTGAAKAVGKVIPALNGKLTGMAF 233

Query: 548 RVPVANVSVVDL 583
           RVP  +VSVVDL
Sbjct: 234 RVPTPDVSVVDL 245


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
 Frame = +3

Query: 90  IPMLFHGVRLVLNTLLNQPVCSQPLIKLLLTWWVEPRK*SSPHQVLMLPCL*LVSTWKPT 269
           +P  ++ V L    L +QP+   P+I  L    V P +   PH +   P     +++ P 
Sbjct: 161 VPSHWYPVSLPSPNLPHQPISKPPVIPNLPKLQVHPNR--LPHPIHNHPYS-SPTSYPPP 217

Query: 270 ILPTKLFQMLPAQL---TASHPSQRSS 341
           + P       P QL   TA  PS +SS
Sbjct: 218 LCPATYCPSNPPQLAPATAIAPSSQSS 244


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -2

Query: 95  GDPSQRTQL--SSFRLRRGVHLRPQRY 21
           G P++R  L   +F +RRGVHL+  +Y
Sbjct: 163 GIPTKRKDLFPCNFFIRRGVHLKVNKY 189


>SPBC4B4.06 |vps25||ESCRT II complex subunit
           Vps25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = +1

Query: 397 HPEDC*WTFWKTVARW 444
           +P+D  W +W++++ W
Sbjct: 91  NPKDVFWVYWRSISEW 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,502,335
Number of Sequences: 5004
Number of extensions: 52988
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)