Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_P15
         (585 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    26   0.31 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    24   1.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.7  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   8.9  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 541 GFPCSCRKCISC 576
           G  CSC KCI C
Sbjct: 82  GMQCSCNKCIGC 93


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +2

Query: 14  FNGTVEAVDGHLVV----NGKKIAVFSERDPHAIPWGQAGAEYVVESTG 148
           FN  V+ V  H       N KK+      +PH IP  Q  +E++ ++TG
Sbjct: 244 FNTLVDLVPKHACAEYRRNFKKMQEEKIFEPHRIPQLQEVSEFLKKNTG 292


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -3

Query: 262 FQVDTNY--KHGSISTWCGDDYFLGSTHQVSRSFISGCEHTG*FNNVFSTSL 113
           FQV+ ++  K     +W GD + +    +VSR+  +G   T     V S S+
Sbjct: 691 FQVNQSHGIKRSGSHSWEGDSFKVSKHEEVSRTSTAGQFPTNVATTVTSMSI 742


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 555 GTRKAIPVSFPVSCGMT 505
           G ++ I  +FP +CG T
Sbjct: 9   GKKRYITAAFPSACGKT 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,042
Number of Sequences: 438
Number of extensions: 3488
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)