Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_P14
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe...    29   0.39 
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   0.69 
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   1.6  
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    26   3.7  
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom...    25   6.4  
SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          25   8.4  

>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
 Frame = +2

Query: 254 PLFGSTNTENKQXXXXXXXXXXXXXXXXXXXXAKTTAAAPTMFSAPTTTAVSAFGGNKPL 433
           P FGST T+N+                     A T A+  T F   T     AFG  KP 
Sbjct: 8   PSFGSTGTQNQNTGTSAGTGLFSSNTFGNNTQANTPAS--TGFGGVTG---GAFGQTKPQ 62

Query: 434 SFGG-FSSPPKHPVGSPG---FGQ 493
           + G  F + P     +PG   FGQ
Sbjct: 63  TGGSLFGNKPNATSTTPGLNLFGQ 86


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 28.3 bits (60), Expect = 0.69
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +2

Query: 362 AAAPTMFSAPTTTAVSAFGGNKPLSFGGFSSP 457
           +++ +M S+ + TA+S+   + PLS   F+SP
Sbjct: 43  SSSSSMLSSSSATAISSSSSSSPLSSSSFTSP 74


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
 Frame = +2

Query: 230 FGGGDASKP---LFGSTNTENKQXXXXXXXXXXXXXXXXXXXXAKTTAAAPTMFSAPTTT 400
           FG  ++S P   LFGST T N                      A TT    ++F+ P+TT
Sbjct: 528 FGSANSSTPGTGLFGSTQTNN--------ATSNTGTGLFGSNNANTTNTGGSLFNKPSTT 579

Query: 401 AVSAFG 418
               FG
Sbjct: 580 TGGLFG 585



 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = +2

Query: 215 STGFAFG--GGDASKPLFGSTNT 277
           S GF+FG    +A KP FGST T
Sbjct: 461 SGGFSFGQNANNAPKPAFGSTAT 483


>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 383 SAPTTTAVSAFGGNKPLSFGGFSSPPKHPVGSPGF 487
           SAP+    S       +SFGGF+S  + P  S  F
Sbjct: 349 SAPSAKPASNTAAFSSISFGGFNSLNQLPTSSSAF 383


>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 416

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 159 KLIFLSLSAKNFLIIDAIEITKSIKTWEFYPF*KYFQTL 43
           +L+ L LS K    ++ IE + S + WEFY + K F  L
Sbjct: 358 ELVALQLSKK----LEPIESSWSGRKWEFYSYAKEFPEL 392


>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 414 NAETAVVVGAENIVGAAAVVLAPNEKLPNEGALVV 310
           NA+   V  A  IVG A  + +  E  PNE A+V+
Sbjct: 416 NAKRNNVSNATFIVGQAEKIFSSIETPPNETAMVI 450


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,861,680
Number of Sequences: 5004
Number of extensions: 34496
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)