Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_P14
(502 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0118 + 14597863-14597929,14598844-14599806,14599909-145999... 33 0.097
10_08_0216 - 15942379-15942852,15942956-15943033 31 0.69
05_07_0258 - 28729620-28729782,28730193-28730339,28730808-287310... 30 0.91
01_02_0048 - 10626467-10627498,10628522-10628617 29 1.6
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333... 29 2.8
12_01_0425 + 3347804-3348284,3348544-3348759,3349038-3349588,334... 28 3.7
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 28 3.7
11_06_0562 + 25003246-25003746,25004975-25005214,25005576-250060... 28 4.8
03_02_0874 + 12017069-12018051,12018137-12018316,12018421-120186... 27 8.5
01_01_1053 - 8305111-8305476 27 8.5
>03_03_0118 +
14597863-14597929,14598844-14599806,14599909-14599936,
14600288-14600666
Length = 478
Score = 33.5 bits (73), Expect = 0.097
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 371 PTMFSAPTTTAVSAFGGNKPLSFGGFSSPPKHPVGSP--GFGQPVS 502
PT FS P GG P + GGF +PP G+P GFG P S
Sbjct: 387 PTDFSPPAAGTTPPAGGFTPPA-GGFGTPPLGGFGTPPSGFGPPGS 431
>10_08_0216 - 15942379-15942852,15942956-15943033
Length = 183
Score = 30.7 bits (66), Expect = 0.69
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -2
Query: 423 FPPNAETAVVVGAENIVGAAAVVLAPNEKLPNEGALVVAVVK 298
+ P A AVVV AE +VGA VV+A + E LVV K
Sbjct: 141 YGPYASGAVVVAAEEVVGAVQVVVA--TEAAQEAGLVVGTHK 180
>05_07_0258 -
28729620-28729782,28730193-28730339,28730808-28731032,
28731148-28731178,28731424-28731940
Length = 360
Score = 30.3 bits (65), Expect = 0.91
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = -2
Query: 486 NPGLPTG-CFGG-EEKPPKLNGLFPPNAETAVVVGAENIVGAAAVVLAPNEKLPNEGALV 313
N PT FGG + PP PP + G + +GAAA + E L + A V
Sbjct: 190 NTSTPTNPAFGGYDNSPPGFGNNSPPLYGSMSPPGYNDNIGAAAAMAGSKETLLSL-ACV 248
Query: 312 VAVVKLN 292
VA V LN
Sbjct: 249 VATVSLN 255
>01_02_0048 - 10626467-10627498,10628522-10628617
Length = 375
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -2
Query: 429 GLFPPNAETAVVVGAENIVGAAAVVLAPNEKLPNEGALVVAVVKLN 292
G PP+ A + V A + P+E LP+EG LV + L+
Sbjct: 275 GALPPSENVAPPESDASSVAMALAMAPPSENLPSEGNLVAMAMGLD 320
>12_01_0423 +
3337401-3337419,3337777-3338235,3338650-3338735,
3338974-3339022,3339225-3339533,3339555-3339710,
3339871-3340086,3340404-3340906,3341050-3341116,
3341215-3341272,3341561-3341699,3341840-3341956,
3342069-3342246,3342459-3343093
Length = 996
Score = 28.7 bits (61), Expect = 2.8
Identities = 30/100 (30%), Positives = 37/100 (37%), Gaps = 7/100 (7%)
Frame = +2
Query: 212 PSTGFAFGGG-DASKPLFGSTNTENKQXXXXXXXXXXXXXXXXXXXXAKTTAAAPTMFSA 388
PS AFGG ++P FG + A TT A T A
Sbjct: 222 PSQSSAFGGPFQQAQPAFGGST-------FGAASTPTFGTTTTPSFGATTTPAFGTTTPA 274
Query: 389 PTTTAVSAFGGNKPLSFG--GFSSPPKHPVGS----PGFG 490
+T+ S FG + +FG GF S GS PGFG
Sbjct: 275 FGSTSTSVFGASSAPAFGSTGFGSSTTPGFGSSGSTPGFG 314
>12_01_0425 +
3347804-3348284,3348544-3348759,3349038-3349588,
3349752-3349815,3349915-3349975,3350271-3350409,
3350561-3350677,3350794-3350971,3351218-3351828
Length = 805
Score = 28.3 bits (60), Expect = 3.7
Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 3/100 (3%)
Frame = +2
Query: 212 PSTGFAFGGG-DASKPLFGSTNTENKQXXXXXXXXXXXXXXXXXXXXAKTTAAAPTMFSA 388
PS AFGG ++P FGS+ T T+ P++F A
Sbjct: 29 PSQSNAFGGTFQQTQPAFGSS-TFGASSTPAFGATTTPAFGTTTPAFGSTS---PSLFGA 84
Query: 389 PTTTAV--SAFGGNKPLSFGGFSSPPKHPVGSPGFGQPVS 502
+ A S FG + +FG S+P S FG S
Sbjct: 85 TSAPAFGSSGFGSSGTPAFGASSTPGFGASSSASFGTSTS 124
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 28.3 bits (60), Expect = 3.7
Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Frame = -2
Query: 495 GCPNPGLPTGCFGGEEKPPKLNGL-FPPNAETAVVVGAENIVGAAAVVLAPNEKL 334
G P P +P G GG PP GL PP V G +G + A L
Sbjct: 1203 GAPAPPMPPGVPGGPPPPPGGRGLPAPPGGRGVVGHGLTRSLGLNSAATARRSTL 1257
>11_06_0562 +
25003246-25003746,25004975-25005214,25005576-25006097,
25006184-25007248,25007350-25007656,25007761-25008001,
25008104-25008302,25008771-25008852,25008959-25009209,
25010061-25010219,25010220-25010603
Length = 1316
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 383 SAPTTTAVSAFGGNKPLSFGGFSSP 457
++P TTA GG P+S GG S+P
Sbjct: 62 ASPPTTAAGGQGGGGPVSGGGGSAP 86
>03_02_0874 +
12017069-12018051,12018137-12018316,12018421-12018600,
12018718-12018797,12018999-12019259,12019360-12019474,
12019631-12019855,12020840-12020849
Length = 677
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 362 AAAPTMFSAPTTTAVSAFGGNKPLSFGGFSSPP 460
AAA T A T +AFG ++PL+ SPP
Sbjct: 527 AAAVTTAMAMTIPTANAFGSSQPLATTMVESPP 559
>01_01_1053 - 8305111-8305476
Length = 121
Score = 27.1 bits (57), Expect = 8.5
Identities = 21/52 (40%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Frame = +2
Query: 350 AKTTAAAPTMFSAPTT--TAVSAFGGNKPLSFGGFSSPPKH---PVGSPGFG 490
+K T PT F +AV AFGG S GFS P P G GFG
Sbjct: 37 SKDTVVQPTTFPPFDRFGSAVPAFGGMPGSSIPGFSLPGSSGSTPGGLGGFG 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,654,135
Number of Sequences: 37544
Number of extensions: 252749
Number of successful extensions: 880
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -