Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_P14
(502 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70284-13|CAB54280.1| 639|Caenorhabditis elegans Hypothetical p... 34 0.067
Z70284-12|CAB54278.1| 549|Caenorhabditis elegans Hypothetical p... 31 0.47
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co... 31 0.62
AC024754-1|AAK71405.1| 394|Caenorhabditis elegans Hypothetical ... 29 2.5
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 28 4.4
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 28 4.4
Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical p... 27 7.6
Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical pr... 27 7.6
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 27 7.6
>Z70284-13|CAB54280.1| 639|Caenorhabditis elegans Hypothetical
protein K07F5.13c protein.
Length = 639
Score = 33.9 bits (74), Expect = 0.067
Identities = 30/98 (30%), Positives = 38/98 (38%), Gaps = 5/98 (5%)
Frame = +2
Query: 215 STGFAFGGGDASKPLFGST---NTENKQXXXXXXXXXXXXXXXXXXXXAKTTAAAPTMF- 382
S+G FG SKPLFGST ++ TT+ A T+F
Sbjct: 25 SSGTLFGSTTPSKPLFGSTAQASSTPSLFGTTNTSTPSGGLFGKTGTSTTTTSTAGTLFG 84
Query: 383 SAPTT-TAVSAFGGNKPLSFGGFSSPPKHPVGSPGFGQ 493
+APTT TA + G G SS +G G Q
Sbjct: 85 AAPTTSTATPSLFGASTTGLFGTSSTTSGGLGGIGSTQ 122
>Z70284-12|CAB54278.1| 549|Caenorhabditis elegans Hypothetical
protein K07F5.13b protein.
Length = 549
Score = 31.1 bits (67), Expect = 0.47
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Frame = +2
Query: 215 STGFAFGGGDASKPLFGST---NTENKQXXXXXXXXXXXXXXXXXXXXAKTTAAAPTMF- 382
S+G FG SKPLFGST ++ TT+ A T+F
Sbjct: 25 SSGTLFGSTTPSKPLFGSTAQASSTPSLFGTTNTSTPSGGLFGKTGTSTTTTSTAGTLFG 84
Query: 383 SAPTTTAV--SAFGGN 424
+APTT+ S FG +
Sbjct: 85 AAPTTSTATPSLFGAS 100
>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore complex
protein protein7 protein.
Length = 1217
Score = 30.7 bits (66), Expect = 0.62
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 371 PTMFSAPTTTAVSAFGGNKPLSFGGFSSPPKHPVGSPG 484
P MF P+++++ AF + S GF S P G+ G
Sbjct: 1047 PPMFGGPSSSSIPAFSTSNSSSTSGFPSSTATPFGNAG 1084
>AC024754-1|AAK71405.1| 394|Caenorhabditis elegans Hypothetical
protein Y32G9B.1 protein.
Length = 394
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = +2
Query: 383 SAPTTTAVSAFGGNKPLSFGGFSSPPKHPVGSPGFGQP 496
S P T S F PL+FG S+PP P FG P
Sbjct: 88 STPPTPPPSTFPTLPPLTFGTPSTPPPPATLPPMFGIP 125
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +2
Query: 374 TMFSAPTTTAVSAFGGNKPLSFGGFSSPPKHPVGSPGFG 490
T F AP+TT S+ G + FGG S P S GFG
Sbjct: 390 TGFGAPSTTDSSS--GQQTAGFGGASKPGFGGDSSTGFG 426
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +2
Query: 374 TMFSAPTTTAVSAFGGNKPLSFGGFSSPPKHPVGSPGFG 490
T F AP+TT S+ G + FGG S P S GFG
Sbjct: 390 TGFGAPSTTDSSS--GQQTAGFGGASKPGFGGDSSTGFG 426
>Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical
protein C34F6.10 protein.
Length = 1441
Score = 27.1 bits (57), Expect = 7.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 166 WKRYYNGRKHFWHLNT 213
W+ Y GR HF+ LNT
Sbjct: 1314 WQLCYEGRNHFYELNT 1329
>Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical protein
C34F6.10 protein.
Length = 1441
Score = 27.1 bits (57), Expect = 7.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 166 WKRYYNGRKHFWHLNT 213
W+ Y GR HF+ LNT
Sbjct: 1314 WQLCYEGRNHFYELNT 1329
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 27.1 bits (57), Expect = 7.6
Identities = 22/85 (25%), Positives = 30/85 (35%)
Frame = -2
Query: 495 GCPNPGLPTGCFGGEEKPPKLNGLFPPNAETAVVVGAENIVGAAAVVLAPNEKLPNEGAL 316
G P G FG + GLF + TA + G++ AP+ L A
Sbjct: 119 GASAPSAGAGMFGANKPAAPTGGLFGSSTSTATTAPTGGLFGSSTA--APSSGLFGSTAA 176
Query: 315 VVAVVKLNGCLFSVFVEPNKGLDAS 241
A L G + P+ GL S
Sbjct: 177 PAAPGGLFGSTSTSTAAPSGGLFGS 201
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,641,306
Number of Sequences: 27780
Number of extensions: 213678
Number of successful extensions: 680
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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