Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_P12
(621 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho... 137 1e-33
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.41
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 27 1.7
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch... 24 1.9
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S... 25 6.7
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 25 6.7
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 25 6.7
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 25 6.7
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 25 8.8
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 25 8.8
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 8.8
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 25 8.8
>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
phospholipase C |Schizosaccharomyces pombe|chr
2|||Manual
Length = 424
Score = 137 bits (332), Expect = 1e-33
Identities = 66/176 (37%), Positives = 104/176 (59%), Gaps = 2/176 (1%)
Frame = +2
Query: 86 LNIFTLNCWGIPFVSKNRKERFQAISKYLVESSHNIVCLQEVWSEKDYLFLKETLKTVLP 265
L + + NCWG+ FVSK R ER +A+ + L + ++IV LQEVWS D+ ++ + L
Sbjct: 9 LRVLSFNCWGLRFVSKYRTERLKAVGEKLAKCDYDIVLLQEVWSIYDFQEIRNLVSCNLV 68
Query: 266 YSHYFYSGVLGSGLCVFSKWVIQDVFFHQWPLNGYIHKIHHGDWFGGKGVGLCRIK-CGD 442
YS +F+S +G+GL +FSK+ I + +++PLNG GDW+ GKGV ++
Sbjct: 69 YSRFFHSAAMGAGLAMFSKFPIIESSMNKYPLNGRPQAFWRGDWYVGKGVATASLQHPSG 128
Query: 443 RLVNVYCTHLHAEYHVD-DMYLAHRVLQAYSTAEFVKLTTAPADVSILAGDLNTAP 607
R+++++ THLHA Y D YL HR+ QA+ ++ ++ + I AGD N P
Sbjct: 129 RIISLFNTHLHAPYGKGADTYLCHRLSQAWYISKLLRAAVQRGHIVIAAGDFNIQP 184
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.5 bits (63), Expect = 0.41
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 419 NQHLCLQTNLHDESYVYTHSEATGEKTH 336
NQHL L+T+ HD+S Y S + G +
Sbjct: 321 NQHLKLRTDSHDDSRAYDSSSSMGNPAY 348
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 457 NINKSVSTFDAAQTNTFASKPISMMN 380
NI+ S +A+ NTF S P+S+ N
Sbjct: 556 NISNLTSPIEASNGNTFGSNPVSLPN 581
>SPCC1020.09 |||WD repeat protein, human WDR79
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 399
Score = 24.2 bits (50), Expect(2) = 1.9
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +2
Query: 101 LNCWGIPFVSKNRK 142
LNCW +PF ++K
Sbjct: 70 LNCWNVPFSDLSKK 83
Score = 21.4 bits (43), Expect(2) = 1.9
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Frame = +2
Query: 23 NKRFGYLCSTQNISISVMEFT----LNIFTLNCW 112
++ FGY+C + N+ +V+ + LN F + W
Sbjct: 21 SQNFGYVCGSINLGTNVIAQSPTKPLNFFHSSRW 54
>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
L3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 326
Score = 25.4 bits (53), Expect = 6.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 565 WCRRQLDKLCCRVRLK 518
W RRQL +LC R+ LK
Sbjct: 216 WPRRQLSRLCKRLSLK 231
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +2
Query: 173 VESSHNIVCLQEVWSEKDYLFLKETLKTVLPYSHYFYSGVLGSGLCVFSKW 325
++ H I+ ++ +++K+ + + +T Y G+L +C FS W
Sbjct: 600 LQEEHTILSIKASYNKKESHLINQAYET---QEAQVYKGMLKCSVCNFSNW 647
>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 708
Score = 25.4 bits (53), Expect = 6.7
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 32 FGYLCSTQNISISVMEFTLNIFTLNCWGIPFVSKNRKERFQAISKYLV 175
F +SI + ++F N + +SKNR+ Q ISKYL+
Sbjct: 495 FNVFVKMAELSILLQNVLQHLF--NARAVMTMSKNRRTVAQKISKYLI 540
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 25.4 bits (53), Expect = 6.7
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 44 CSTQNISISVMEFTLNIFTLNCWGIPFVSKNRKERFQAISKYLVESSHNIVCL 202
CS + + ++EFT F L+ P V + + + +++YL+ SSHN L
Sbjct: 412 CSNDDSKMGLIEFTS--FLLSPHNSPVVPVIQ-DMSRPLNEYLISSSHNTYLL 461
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 368 YIHKIHHGDWFGGKGVGL 421
YIH+I G FG KGV +
Sbjct: 342 YIHRIGRGGRFGRKGVSI 359
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 25.0 bits (52), Expect = 8.8
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 140 KERFQAISKYLVESSHNIVCLQEVWSEKDYLFLKETLKTVLP 265
KER+ +SK V + V LQE E D + L T++ LP
Sbjct: 422 KERYFLLSKSFVGKNQFRVYLQEFDFEADKVNLISTIELELP 463
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 25.0 bits (52), Expect = 8.8
Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 10/112 (8%)
Frame = +2
Query: 38 YLCSTQNISISVMEFTLNIFTLNCWG-----IPFVSKNRKERFQAISKYLVESSHNIVCL 202
+ ST +S+ +F +NI WG P S+ + +F + V SS L
Sbjct: 248 FAVSTAQVSVMFPKFYINIMAALSWGTALFRFPIFSEPAEYQFADFADLSVASSSYADYL 307
Query: 203 QE---VWSEKDYLFLKET--LKTVLPYSHYFYSGVLGSGLCVFSKWVIQDVF 343
+ ++S D + + L ++ Y ++ + + L +F KW++ +F
Sbjct: 308 PKSYGMYSFLDSIGIGTACWLPFLIVMVIYLFAALFVALLVIFLKWLMSRIF 359
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 202 KTDYIVGTFNQILRYGLKSLFSIFRYKWYTPTIQGEY 92
K Y+V NQ++++GL L I R P I ++
Sbjct: 243 KDSYVVKAGNQLIQHGLIRLLGIRRVFENDPEIDAQF 279
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,750
Number of Sequences: 5004
Number of extensions: 60413
Number of successful extensions: 183
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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