Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_P12
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1093 - 24271826-24273427                                         33   0.14 
11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257     29   3.0  
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716...    28   5.2  
12_01_0013 - 99290-99299,99593-99703,100085-100587,100925-100995...    28   6.9  
06_01_0793 - 5918912-5919793,5919830-5920285                           28   6.9  
09_02_0289 - 6941154-6941399,6941630-6941722,6941801-6941884,694...    27   9.1  
08_02_0294 - 15432424-15432669,15433007-15433099,15433168-154332...    27   9.1  

>08_02_1093 - 24271826-24273427
          Length = 533

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -2

Query: 428 CGTNQHLCLQTNLHDESYVYTHSEATGEKTHLGSP 324
           CG    + LQ   HDES ++ + +ATGE  HL SP
Sbjct: 406 CGGALLIALQA--HDESSIFLYDDATGEVFHLNSP 438


>11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257
          Length = 921

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 455 VYCTHLHAE-YHVDDMY-LAHRVLQAYSTAEFVKLTTAPA 568
           V   H+  + +H  D+Y + H +LQA+S    +KL  +PA
Sbjct: 274 VQAAHIRIKGHHASDIYQVGHAILQAFSEYSLLKLPFSPA 313


>01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,
            7161372-7162820
          Length = 1057

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 113  GIPFVSKNRKERFQAISKYLVESSHNIVCLQEVWSEKDYLFLKETL 250
            GI     NRKE F+A++  +  +  N + L  V S  D+L  + ++
Sbjct: 966  GITSHQMNRKEHFEALNSGMFSAKWNALQLGSVSSSADFLSARNSI 1011


>12_01_0013 -
           99290-99299,99593-99703,100085-100587,100925-100995,
           101413-101491,102336-102956
          Length = 464

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 440 DRLVNVYCTHLHAEYHVDDMYL 505
           DR++  Y  HL A++H DD+ L
Sbjct: 37  DRIIAFYLAHLAADHHDDDLLL 58


>06_01_0793 - 5918912-5919793,5919830-5920285
          Length = 445

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 20/85 (23%), Positives = 32/85 (37%)
 Frame = +2

Query: 128 SKNRKERFQAISKYLVESSHNIVCLQEVWSEKDYLFLKETLKTVLPYSHYFYSGVLGSGL 307
           S+  +  F +  + L        C  +V S K  L  K       P++ +  +    +G 
Sbjct: 37  SRGHRVSFVSTPRNLARLPDGTECTNDVPSGKFELLWKAFDALAAPFAEFLGAACDAAG- 95

Query: 308 CVFSKWVIQDVFFHQWPLNGYIHKI 382
                W+I D F H  PL    HK+
Sbjct: 96  -ERPDWIIADTFHHWAPLVALQHKV 119


>09_02_0289 -
           6941154-6941399,6941630-6941722,6941801-6941884,
           6947011-6947146,6947310-6947455,6947826-6948051,
           6948595-6948677,6949004-6949198,6949276-6949374,
           6949762-6949875,6949949-6950036,6950353-6950558,
           6950850-6950902,6951074-6951377,6952195-6952283,
           6952675-6953052,6953665-6953726,6954124-6954189,
           6955126-6955205
          Length = 915

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 266 YSHYFYSGVLGSGLCVFS 319
           Y+HYFY   +G+GL + S
Sbjct: 693 YTHYFYEATVGAGLPIIS 710


>08_02_0294 -
           15432424-15432669,15433007-15433099,15433168-15433251,
           15434311-15434446,15434601-15434746,15435017-15435242,
           15435885-15435967,15436867-15437061,15437148-15437246,
           15438237-15438350,15438424-15438511,15438790-15438995,
           15439306-15439358,15440473-15440776,15441278-15441366,
           15441584-15441958,15442382-15442446,15442945-15442970,
           15444007-15444225
          Length = 948

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 266 YSHYFYSGVLGSGLCVFS 319
           Y+HYFY   +G+GL + S
Sbjct: 726 YTHYFYEATVGAGLPIIS 743


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,513,435
Number of Sequences: 37544
Number of extensions: 347762
Number of successful extensions: 854
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)