Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_P12
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82060-4|CAB04885.2|  434|Caenorhabditis elegans Hypothetical pr...   176   9e-45
Z73969-21|CAI46568.2|  272|Caenorhabditis elegans Hypothetical p...    30   1.2  
Z70783-12|CAI46596.2|  272|Caenorhabditis elegans Hypothetical p...    30   1.2  
Z73971-12|CAC42267.1|  718|Caenorhabditis elegans Hypothetical p...    28   6.2  
Z72515-6|CAA96686.2|  718|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AF016684-16|AAB66213.1|  506|Caenorhabditis elegans Hypothetical...    27   8.2  

>Z82060-4|CAB04885.2|  434|Caenorhabditis elegans Hypothetical
           protein T27F6.6 protein.
          Length = 434

 Score =  176 bits (429), Expect = 9e-45
 Identities = 87/183 (47%), Positives = 116/183 (63%), Gaps = 6/183 (3%)
 Frame = +2

Query: 86  LNIFTLNCWGIP----FVSKNRKERFQAISKYLVESSHNIVCLQEVWSEKDYLFLKETLK 253
           L + TLN W +P      S +R  R   I +Y+++  ++IV LQE+WS  D++ L E + 
Sbjct: 39  LRVVTLNAWCLPQPWPIGSTDRVHRLNKIGQYMIDELYDIVGLQELWSYYDFVRLSEQVS 98

Query: 254 TVLPYSHYFYSGVLGSGLCVFSKWVIQDVFFHQWPLNGYIHKIHHGDWFGGKGVGLCRIK 433
           +V PY HYF+SG  GSG+CVFS+  I     +++ LNG+ H IH GDWFGGK VGL  I+
Sbjct: 99  SVYPYFHYFHSGFTGSGVCVFSRHPIVSTLTNRYSLNGFAHHIHRGDWFGGKVVGLTEIE 158

Query: 434 C-GDRLVNVYCTHLHAEY-HVDDMYLAHRVLQAYSTAEFVKLTTAPADVSILAGDLNTAP 607
             GD  VN Y THLHAEY   +D+YL HR  QA+  A+FV+ T   ADV I+ GDLN  P
Sbjct: 159 IDGDLRVNFYTTHLHAEYDRENDLYLPHRTAQAFELAQFVRHTARGADVVIVTGDLNMEP 218

Query: 608 GDI 616
            D+
Sbjct: 219 CDL 221


>Z73969-21|CAI46568.2|  272|Caenorhabditis elegans Hypothetical
           protein ZK856.14 protein.
          Length = 272

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/67 (23%), Positives = 32/67 (47%)
 Frame = +2

Query: 2   HEALSSFNKRFGYLCSTQNISISVMEFTLNIFTLNCWGIPFVSKNRKERFQAISKYLVES 181
           +E    F+ R+  +C  + I ++++ +     + N WG+ F   N+   F  I  ++V  
Sbjct: 114 YEIPEIFDFRYFNICRDKMIWLTMLIYGCLFNSFNPWGMAFSVLNQIHSFNIIDAFVVAL 173

Query: 182 SHNIVCL 202
           S   +CL
Sbjct: 174 SIFFICL 180


>Z70783-12|CAI46596.2|  272|Caenorhabditis elegans Hypothetical
           protein ZK856.14 protein.
          Length = 272

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/67 (23%), Positives = 32/67 (47%)
 Frame = +2

Query: 2   HEALSSFNKRFGYLCSTQNISISVMEFTLNIFTLNCWGIPFVSKNRKERFQAISKYLVES 181
           +E    F+ R+  +C  + I ++++ +     + N WG+ F   N+   F  I  ++V  
Sbjct: 114 YEIPEIFDFRYFNICRDKMIWLTMLIYGCLFNSFNPWGMAFSVLNQIHSFNIIDAFVVAL 173

Query: 182 SHNIVCL 202
           S   +CL
Sbjct: 174 SIFFICL 180


>Z73971-12|CAC42267.1|  718|Caenorhabditis elegans Hypothetical
           protein T11A5.6 protein.
          Length = 718

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +2

Query: 242 ETLKTVLPYSHYFYSGVLGSGLCVFSKW--VIQDVFF 346
           + L  ++P   Y + GV    LCV  KW  +I D FF
Sbjct: 220 DVLDDIIPKKQYSHYGVYQIKLCVEGKWEVIIVDDFF 256


>Z72515-6|CAA96686.2|  718|Caenorhabditis elegans Hypothetical
           protein T11A5.6 protein.
          Length = 718

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +2

Query: 242 ETLKTVLPYSHYFYSGVLGSGLCVFSKW--VIQDVFF 346
           + L  ++P   Y + GV    LCV  KW  +I D FF
Sbjct: 220 DVLDDIIPKKQYSHYGVYQIKLCVEGKWEVIIVDDFF 256


>AF016684-16|AAB66213.1|  506|Caenorhabditis elegans Hypothetical
           protein F45C12.16 protein.
          Length = 506

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/54 (27%), Positives = 20/54 (37%)
 Frame = +2

Query: 452 NVYCTHLHAEYHVDDMYLAHRVLQAYSTAEFVKLTTAPADVSILAGDLNTAPGD 613
           +VY  +LHA Y         + L  Y       L     +  I+ GDL    GD
Sbjct: 325 DVYFKNLHANYCEGKEQYVKQALDMYEICWLTTLRALKPNCKIIGGDLKIQSGD 378


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,884,950
Number of Sequences: 27780
Number of extensions: 330985
Number of successful extensions: 750
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)