Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_P09
         (609 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4IYW3 Cluster: Putative uncharacterized protein; n=1; ...    36   0.57 
UniRef50_UPI0000DC0B84 Cluster: UPI0000DC0B84 related cluster; n...    35   1.3  
UniRef50_A5CQD9 Cluster: Putative uncharacterized protein; n=1; ...    34   3.0  
UniRef50_Q10NF9 Cluster: Retrotransposon protein, putative, uncl...    33   7.0  
UniRef50_Q4UBN4 Cluster: Putative uncharacterized protein; n=1; ...    32   9.3  

>UniRef50_Q4IYW3 Cluster: Putative uncharacterized protein; n=1;
           Azotobacter vinelandii AvOP|Rep: Putative
           uncharacterized protein - Azotobacter vinelandii AvOP
          Length = 232

 Score = 36.3 bits (80), Expect = 0.57
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = -1

Query: 330 LPHPLSKIWGRRHLSSLNLLSFRLKKSLSQHYPLSSPQNFL 208
           LP+PL + W R   S LN L  +  + LSQHY ++   NFL
Sbjct: 31  LPYPLLRAWERWMQSGLNALRQQGAQMLSQHYAVAPAWNFL 71


>UniRef50_UPI0000DC0B84 Cluster: UPI0000DC0B84 related cluster; n=1;
           Rattus norvegicus|Rep: UPI0000DC0B84 UniRef100 entry -
           Rattus norvegicus
          Length = 300

 Score = 35.1 bits (77), Expect = 1.3
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -1

Query: 501 TMTRIHISVSLPLKI-SHLHAHIETLARTHR*LTRSSPRSLQAVAACRETSTHARRSTLP 325
           T T +HI     L   +H HAH  TL  TH   T ++  +LQ    CR T THA   +  
Sbjct: 213 THTDLHIHTHTYLHAHTHTHAHTHTLMHTHS-STHANAHTLQ----CRHTHTHAHSHSQT 267

Query: 324 H 322
           H
Sbjct: 268 H 268


>UniRef50_A5CQD9 Cluster: Putative uncharacterized protein; n=1;
           Clavibacter michiganensis subsp. michiganensis NCPPB
           382|Rep: Putative uncharacterized protein - Clavibacter
           michiganensis subsp. michiganensis (strain NCPPB 382)
          Length = 300

 Score = 33.9 bits (74), Expect = 3.0
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 315 IRGVEAWSGGRVSTSLDTRPPPAATAGSCESATDESWRVF 434
           + G  +W+G   +T+  T P PA T G     TD +W VF
Sbjct: 175 VLGSGSWTGRDTATAKQTTPAPAVTGGFRCEPTDGNWYVF 214


>UniRef50_Q10NF9 Cluster: Retrotransposon protein, putative,
           unclassified, expressed; n=6; root|Rep: Retrotransposon
           protein, putative, unclassified, expressed - Oryza
           sativa subsp. japonica (Rice)
          Length = 840

 Score = 32.7 bits (71), Expect = 7.0
 Identities = 19/39 (48%), Positives = 22/39 (56%)
 Frame = -1

Query: 402 RSSPRSLQAVAACRETSTHARRSTLPHPLSKIWGRRHLS 286
           R SP S ++ +A R  S   RRST PH  S I  RR LS
Sbjct: 420 RRSPISPRSRSANRRPSPQRRRSTSPHDRSPIHSRRSLS 458


>UniRef50_Q4UBN4 Cluster: Putative uncharacterized protein; n=1;
           Theileria annulata|Rep: Putative uncharacterized protein
           - Theileria annulata
          Length = 314

 Score = 32.3 bits (70), Expect = 9.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 484 VNPRHCTRLFNRSRDYINRRNENNYLSCNYY 576
           +NP++ T L N  R+ +N+R E  Y+   YY
Sbjct: 160 INPQNPTSLLNSDRNTVNKRREVYYMDTQYY 190


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 370,798,990
Number of Sequences: 1657284
Number of extensions: 6036665
Number of successful extensions: 20841
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20809
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43562448615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)