Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_P08
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    29   0.36 
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    27   0.84 
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    27   1.1  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    27   1.1  
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch...    27   1.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   1.9  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    26   2.6  
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   3.4  
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    25   4.5  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    25   5.9  
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   5.9  

>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 28.7 bits (61), Expect = 0.36
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +2

Query: 71   STISNCISKLSALFTQTPLDEPLKQYGRKLYANITKKLGWDAEEKESH 214
            +TI   I+K    F    LDE L+ Y     A +  ++GWDA   E H
Sbjct: 877  TTIGKIIAK-QLNFKFLDLDELLEDYLEMPIAEVIFRMGWDAFRLEEH 923


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 27.5 bits (58), Expect = 0.84
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = +2

Query: 68  WSTISNCISKLSALFTQTPLDEPLKQYGRKLYANITKKLGWDAEEKESHLDTLLRSLVLN 247
           W T++   ++   L T TPL   L +Y   +   I   LG     K  +   +LRS  +N
Sbjct: 355 WITLNKLKTRKRLLLTGTPLQNDLSEYFSMVNFIIPGSLGTPNSFKAQYERPILRSRSMN 414


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
 Frame = +2

Query: 131 EPLKQYGRKLYANITKKLGWDAE---EKESHLDTLLRSL---VLNKMIS 259
           E  KQ G  +  N TKK  WD+         +DTL +SL   ++NK+ S
Sbjct: 138 EEAKQQGIPIDENATKKKSWDSNCITPGTPFMDTLAKSLRYYIINKLNS 186


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 41  FSNETNFTVWSTISNCISKLSALFTQTPLDE 133
           F +ETNF + ST S  IS  S L+ +  LD+
Sbjct: 347 FVDETNFPIISTPSLVISSNSILYPKDSLDQ 377


>SPBC16D10.01c ||SPBC418.03c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
 Frame = +2

Query: 2   HEDFLQFLKLMEAFSNETNFTVWSTIS-NCISKLSALFTQ-TPLDEPLKQY--GRKLY-- 163
           HE+  Q L  ++   ++    +W  +  NC  +   L  Q    +E +K+     K Y  
Sbjct: 222 HEEAHQLLVYLQKEDDQI-LDIWYLLGWNCYVEAQNLQEQGNGSEEEIKELLMNAKFYFI 280

Query: 164 --ANITKKLGWDAEEKESHLDTLLRSL 238
               + +K+GWD E  +SH+  LL  L
Sbjct: 281 SALGVYQKIGWDDEGIKSHIQELLEIL 307


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 74  TISNCISKLSALFTQTPLDEP 136
           T +NC +  S L+T TP+  P
Sbjct: 587 TTTNCTTSTSVLYTSTPITSP 607


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 114 VNNALNFDMQFDIVDHTVKLVSLLKASISFR 22
           V + + FD     V+H +KL  +LK ++ FR
Sbjct: 790 VAHDITFDELLAKVEHKIKLCGILKQAVPFR 820


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = +2

Query: 92  SKLSALFTQTPLDEP-LKQYGRK---LYANITKKLGWDAEE 202
           SK++ + T  P+D+P L+++  +   +   + K LGW+  +
Sbjct: 114 SKINTIDTSIPIDDPLLREFSNRDDSIGEKMLKNLGWNGHD 154


>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
 Frame = +2

Query: 11  FLQFLK-LMEAFSN---ETNFTVWSTISNCISKLSALFTQTPLDEPLKQYGRKLYANITK 178
           FLQ L+ ++++FS+   ET  +++     C +KL    +   L E L     +  ++ TK
Sbjct: 310 FLQTLETILKSFSSTLDETQLSLYQVAVRCCTKLIEQASHFNLSEKLFALAVRQISHKTK 369

Query: 179 KLGWD 193
           + G+D
Sbjct: 370 RPGFD 374


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 209 SHLDTLLRSLVLNKMISFEDPDTIKEAK 292
           S +  +LRSL L + + ++ P ++KE K
Sbjct: 703 SKVKKILRSLTLKQGMKYDSPISVKEIK 730


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 177 RSWAGTQKRRRAISILCSEAWCLIK*SASKIPTQLKK 287
           R  AG      AI IL +  W L++    KIP++ KK
Sbjct: 424 RGGAGFLTFLSAIFILGASIWALVEDEEGKIPSRGKK 460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,531,235
Number of Sequences: 5004
Number of extensions: 28322
Number of successful extensions: 125
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)