Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_P07
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc...    28   0.77 
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    27   1.8  
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    27   2.4  
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|...    27   2.4  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    25   5.5  
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    25   7.2  
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    25   7.2  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   9.5  
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    25   9.5  

>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
           Uap56|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
 Frame = -2

Query: 516 AGYNLPAKYVIHT---VGPQDGSATKLQSCYEKCLAYQ--NEYQLKSVAFPCISTGIY 358
           +G    A +V+ T   + P DG  + L  C+ + LA+Q  NEY   S   P + T ++
Sbjct: 97  SGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVF 154


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +2

Query: 200 SRTGKYICXXXXXXXXXXGRKVQKIILSHSRLV 298
           SR GKYI           G K+Q  +L  SRLV
Sbjct: 233 SRFGKYIQILFDGNATIIGAKIQTYLLERSRLV 265


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 495 KYVIHTVGPQDGSATKLQSCYEKCLAYQNEYQLKS 391
           K +I++ G  DG    LQ+  E   AY N++ ++S
Sbjct: 117 KKIIYSKGGNDGKEDDLQNVNEPQDAYSNDHDIQS 151


>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = -2

Query: 216 YFPVREWNYNDGASASE*STNLDLFPYRTVIF 121
           YF + +WN+  G  A E       +P+++ ++
Sbjct: 230 YFEMNKWNHQTGGDAGELGDGPGSYPFKSAVW 261


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 490 CDTYSWAARRLGDKTTILLREVSRLSERIPVEICRI 383
           C  Y    + L  K T ++  +S+L  ++P E+CR+
Sbjct: 127 CSAYEKLCQPLRIKKTFII--LSQLCPKLPAELCRV 160


>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 193 IPLANREIHLQQRLVNIDIDR 255
           IPLA +++H Q++LV   +D+
Sbjct: 494 IPLAEQQVHQQRKLVKTVLDQ 514


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +1

Query: 268 EDYSIPFPISF*KFPSGT--QSDVCREAVRET 357
           ED  IP P+S   +P G     D+ +E +R++
Sbjct: 75  EDAKIPLPVSLPWYPDGMAFMLDISKEVIRKS 106


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 206 FASGITTMELRLLNDRRTWTFSRIVLLF 123
           +AS  T + L    DRR W+F   +L F
Sbjct: 911 WASAFTILSLNKSIDRRQWSFEHPLLQF 938


>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -3

Query: 455 RQNYNPAT--RSVSLIRTNTS*NLSHSLASPQGYTVSRTASR 336
           R+N +P     S+S + T  S +  H L SP     S TAS+
Sbjct: 156 RENTSPCLYGSSLSNVFTEKSSDYRHGLGSPTSLVSSNTASK 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,249,203
Number of Sequences: 5004
Number of extensions: 46265
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)