Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_P07
(544 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0180 + 15502809-15503312,15503399-15503454,15503934-155040... 98 3e-21
03_02_0926 + 12448032-12448231,12448727-12448815,12449956-124500... 67 7e-12
03_01_0359 - 2805094-2805175,2805256-2805347,2805443-2805517,280... 44 8e-05
09_06_0293 + 22086359-22086496,22086604-22087213,22087407-220879... 30 1.0
01_01_0884 - 6956337-6956431,6956514-6957651 29 2.4
09_06_0001 + 20114108-20115686,20115813-20115928,20116416-201173... 28 5.5
03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012 27 7.3
01_01_1116 + 8839946-8840048,8840142-8842064,8842192-8842307,884... 27 7.3
09_03_0044 - 11855569-11855664,11855775-11855891,11856572-118566... 27 9.7
03_05_0507 + 25017031-25017333,25017397-25017855 27 9.7
>10_08_0180 +
15502809-15503312,15503399-15503454,15503934-15504053,
15504190-15504260,15504603-15504696,15504772-15504978,
15505406-15505657,15505781-15505889,15506112-15506179,
15506278-15506347,15506429-15506503,15506600-15506691,
15506779-15506860
Length = 599
Score = 98.3 bits (234), Expect = 3e-21
Identities = 51/119 (42%), Positives = 69/119 (57%), Gaps = 7/119 (5%)
Frame = -2
Query: 543 CPTGDAKVTAGYNLPAKYVIHTVGPQ------DGSATKLQSCYEKCLAYQNEYQLKSVAF 382
C TG AK+T Y+LPA+ VIHTVGP+ + L CY CL E L+S+A
Sbjct: 171 CRTGMAKMTNAYDLPARKVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLESIAM 230
Query: 381 PCISTGIYGFPNRLAAHIALRTARKFLETNR-EWDRIIFCTFLPVDVDIYETLLQMYFP 208
CI T +P AAH+A+RT R+FLE + + ++FCT D +IY+ LL +YFP
Sbjct: 231 GCIYTEAKNYPREPAAHVAIRTVRRFLEKQKSKIAGVVFCTVSSSDTEIYKRLLPLYFP 289
>03_02_0926 +
12448032-12448231,12448727-12448815,12449956-12450096,
12450181-12450283,12450386-12450481,12450580-12450654,
12450754-12450823,12451028-12451111
Length = 285
Score = 67.3 bits (157), Expect = 7e-12
Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Frame = -2
Query: 543 CPTGDAKVTAGYNLPAKYVIHTVGP----QDGSATKLQSCYEKCLAYQNEYQLKSVAFPC 376
CPTG+A++T + LP VIHTVGP L + Y L + ++ +A P
Sbjct: 169 CPTGEARITPAFKLPVSRVIHTVGPIYDMDKQPEVSLNNAYTNSLKLAKQNGIQYIALPA 228
Query: 375 ISTGIYGFPNRLAAHIALRTARKFLETNREWDRIIF 268
IS G+Y +P + A+ IA+ TA++F +E ++F
Sbjct: 229 ISCGVYRYPPKEASKIAVSTAQRFSNDIKEVHFVLF 264
>03_01_0359 -
2805094-2805175,2805256-2805347,2805443-2805517,
2805582-2805675,2805769-2805872,2806777-2806885,
2807397-2807609,2808170-2808289,2809060-2809115,
2809210-2809287,2809374-2809733
Length = 460
Score = 44.0 bits (99), Expect = 8e-05
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Frame = -2
Query: 543 CPTGDAKVTAGYNLPAKYVIHTVGPQ------DGSATKLQSCYEKCL 421
C TG AK+T Y+LPA+ VIHTVGP+ + L CY CL
Sbjct: 149 CRTGMAKMTNAYDLPARKVIHTVGPKYAVKYHTAAENALSHCYRSCL 195
>09_06_0293 +
22086359-22086496,22086604-22087213,22087407-22087938,
22088617-22089151
Length = 604
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3
Query: 345 GSGNRISLWRCKGMRQISTGIRSDKRDTSRSRIVVLSPSRLA 470
G G+R+ WR G+++++ G+ D +R R+V S + LA
Sbjct: 448 GGGDRVGHWRHGGLKRLAEGVGDDYIWPARHRLVEGSETGLA 489
>01_01_0884 - 6956337-6956431,6956514-6957651
Length = 410
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 92 FLSLTKLHYMKITVRYGKRSKFVDHSEAEAPSL 190
+L+ K Y+K++ RYG+R +F SE E L
Sbjct: 229 YLNKIKPLYVKVSRRYGERLRFASASEGEETDL 261
>09_06_0001 +
20114108-20115686,20115813-20115928,20116416-20117394,
20118820-20119082
Length = 978
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +2
Query: 305 NFLAVRRAMCAARRF--GKPYIPVEMQGNATDFNWY 406
N + + +CA +R G+P + GN TDF WY
Sbjct: 496 NEIQRQEILCAVKRDDQGRPLPDRDGNGNPTDFRWY 531
>03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012
Length = 890
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +2
Query: 329 MCAARRF--GKPYIPVEMQGNATDFNWY 406
+CA +R G+P + GN TDF WY
Sbjct: 504 LCAVKRDDQGRPLPDRDGNGNPTDFRWY 531
>01_01_1116 +
8839946-8840048,8840142-8842064,8842192-8842307,
8843340-8843763,8845187-8845452
Length = 943
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +2
Query: 329 MCAARRF--GKPYIPVEMQGNATDFNWY 406
+CA +R G+P + GN TDF WY
Sbjct: 653 LCAVKRDDQGRPLPDRDGNGNPTDFRWY 680
>09_03_0044 -
11855569-11855664,11855775-11855891,11856572-11856682,
11856768-11856874,11857182-11857221,11857328-11857408,
11857578-11857631,11857800-11857860,11857984-11858029,
11858276-11858352,11858448-11858563,11858654-11858890
Length = 380
Score = 27.1 bits (57), Expect = 9.7
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Frame = +3
Query: 144 KGPSSSIIQKPKLHRCNSTREPGNTFAAASRKYRHR---PGGKCRRLFYPIPD*FLEIS* 314
+GP + P+ + ++ G+ +AAA + GKC+ F D I+
Sbjct: 159 EGPWGARSPIPENNAIAINKQEGSVYAAAGDACAYCWDVESGKCKMTFKGHTDYLHSIAV 218
Query: 315 RYAERCVPRGGSGNRISLWRCK 380
R A R V G +W C+
Sbjct: 219 REANRQVVTGSEDGTARIWDCR 240
>03_05_0507 + 25017031-25017333,25017397-25017855
Length = 253
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 327 RCVPRGGSGNRISLWRCKGMRQISTGI 407
R GG+G LW+ KG+R + +GI
Sbjct: 198 RGAKNGGNGVNWRLWQKKGLRSLGSGI 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,103,915
Number of Sequences: 37544
Number of extensions: 327644
Number of successful extensions: 746
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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