Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_P07
         (544 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73102-4|CAA97408.1|  203|Caenorhabditis elegans Hypothetical pr...    83   1e-16
AF025469-4|AAG00032.1|  270|Caenorhabditis elegans Hypothetical ...    29   1.6  
U53150-8|AAA96128.2|  378|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U51999-4|AAA96085.2|  627|Caenorhabditis elegans Hypothetical pr...    27   6.6  
U40029-5|AAA81125.2|  457|Caenorhabditis elegans Hypothetical pr...    27   6.6  
U40029-4|ABD94116.1|  471|Caenorhabditis elegans Hypothetical pr...    27   6.6  
L16685-3|AAA28169.3|  321|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AL132952-2|CAB63380.1|  190|Caenorhabditis elegans Hypothetical ...    27   6.6  
L25599-1|AAA28053.1|  343|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z73102-4|CAA97408.1|  203|Caenorhabditis elegans Hypothetical
           protein B0035.3 protein.
          Length = 203

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 46/110 (41%), Positives = 61/110 (55%), Gaps = 7/110 (6%)
 Frame = -2

Query: 543 CPTGDAKVTAGYNLP-AKYVIHTVGPQ------DGSATKLQSCYEKCLAYQNEYQLKSVA 385
           C  GDA +T+G N+   K +IHTVGPQ      D     L +CY   L    E  +KS+A
Sbjct: 78  CAVGDAVITSGCNINHIKKIIHTVGPQVYGNVTDERRENLVACYRTSLDIAIENGMKSIA 137

Query: 384 FPCISTGIYGFPNRLAAHIALRTARKFLETNREWDRIIFCTFLPVDVDIY 235
           F CISTG+YG+PN  AA        ++LE N   +RI+  TFL +D + Y
Sbjct: 138 FCCISTGVYGYPNDDAAKTVTNFLTEYLEKNDTIERIVLVTFLDIDNEHY 187


>AF025469-4|AAG00032.1|  270|Caenorhabditis elegans Hypothetical
           protein W09B6.5 protein.
          Length = 270

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -3

Query: 218 CISRFASGITTMELRL-LNDRRTWTFSRIVLLFSCNVIWLMIKKSSWK*NLMIFFLKKKK 42
           C+  F+    +  L L L+D   +TF R    F C +  + I+K+  K ++   F + +K
Sbjct: 160 CVYFFSLAFNSYSLSLRLSDHFIFTFYRYWCCFFCTLFRVKIEKTHTKISISDNFRENRK 219

Query: 41  KN 36
           KN
Sbjct: 220 KN 221


>U53150-8|AAA96128.2|  378|Caenorhabditis elegans Hypothetical
           protein F20A1.2 protein.
          Length = 378

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +3

Query: 402 GIRSDKRDTSRSRIVVLSP 458
           G+R D++D+ +SRI++ SP
Sbjct: 349 GVRKDRKDSDQSRIIIASP 367


>U51999-4|AAA96085.2|  627|Caenorhabditis elegans Hypothetical
           protein C43H6.4 protein.
          Length = 627

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 214 IHLQQRLVNIDIDREESAEDYSIPFPI-SF*KFPSGTQSDVCREAV 348
           IHL++++ ++ IDR   A+ + +P+ + S   + S   SD   E V
Sbjct: 575 IHLEEQMRHVQIDRLTDADSFGVPYFVESEYPYESDDSSDEDEEEV 620


>U40029-5|AAA81125.2|  457|Caenorhabditis elegans Hypothetical
           protein F10G7.5a protein.
          Length = 457

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -3

Query: 200 SGITTMELRLLNDRRTWTFSRIVLLFSCNVIWLMIKKSSWK 78
           S I   + R+    RT TF  + L  +CN +W+ +    +K
Sbjct: 236 SEIRVEQARVWPQLRTTTFLVLFLSLTCNAVWVQLTSGLYK 276


>U40029-4|ABD94116.1|  471|Caenorhabditis elegans Hypothetical
           protein F10G7.5b protein.
          Length = 471

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -3

Query: 200 SGITTMELRLLNDRRTWTFSRIVLLFSCNVIWLMIKKSSWK 78
           S I   + R+    RT TF  + L  +CN +W+ +    +K
Sbjct: 250 SEIRVEQARVWPQLRTTTFLVLFLSLTCNAVWVQLTSGLYK 290


>L16685-3|AAA28169.3|  321|Caenorhabditis elegans Hypothetical
           protein ZC21.3 protein.
          Length = 321

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 452 QNYNPATRSVSLIRTNTS*NLSHSLASPQGYTVSRTASRHT 330
           QNYNP++ S S +  N S +  ++  S Q Y    T ++++
Sbjct: 100 QNYNPSSASSSNVYRNPSTSYGNTQQSNQNYVAYDTTNQNS 140


>AL132952-2|CAB63380.1|  190|Caenorhabditis elegans Hypothetical
           protein Y51H4A.2 protein.
          Length = 190

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 388 RIPLHLHRDIRFPEPPRGTHRSA 320
           R+PL   R + FP P  G HRS+
Sbjct: 80  RVPLLYARKLSFPHPWHGAHRSS 102


>L25599-1|AAA28053.1|  343|Caenorhabditis elegans Hypothetical
           protein F54H12.4 protein.
          Length = 343

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 307 ISRN*SGMG*NNLLHFPPGRCRYLRDAAANVFPGSRVELQRWSF 176
           + RN S    +N  + P  + R LR + +   PGSRV  + W F
Sbjct: 300 LKRNISSTIPDNGTNIPAAKRRVLRGSGSAPPPGSRVYCRLWKF 343


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,642,240
Number of Sequences: 27780
Number of extensions: 276418
Number of successful extensions: 785
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)