Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_P07
         (544 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   1.2  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   3.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   6.1  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   8.1  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/40 (27%), Positives = 16/40 (40%)
 Frame = +1

Query: 10  LVPERTSLEXXXXXXXXXXXXXYFHELFFIINQITLHENN 129
           LVP  T+                 H   F++N+  LHE+N
Sbjct: 378 LVPTTTASPTTEPSTTTSTTISQKHIKVFVVNKDILHEHN 417


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 258 LPVDVDIYET 229
           LP+DVD+Y T
Sbjct: 58  LPIDVDVYNT 67


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -1

Query: 430 EVSRLSERIPVEICRIPLHLHRDIRFPEPPRGTHRS 323
           E+    ER  +      LH+ + +  PEPP+ +  S
Sbjct: 327 EIQLQKERDRLTAMMHHLHVAKQMASPEPPKSSESS 362


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -2

Query: 399 LKSVAFPCISTGIYGFPNRLAAHIALRTARKFLETNREWDRIIFCTFLPVD 247
           +KS+      T  YG     A H AL TA     T  E+D + F  + PV+
Sbjct: 750 VKSLRLEGDETPPYGMELTEAEHYALYTAMAPHATASEFDEMSF-YYSPVE 799


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 208 REIHLQQRLVNIDIDREESAEDYSIPFPIS 297
           +E HL QR+ + D+ ++ +  D  +  PI+
Sbjct: 1   KEKHLTQRINSCDLLKKRNENDPFLKRPIT 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,553
Number of Sequences: 438
Number of extensions: 3623
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)