Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_P05
         (437 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7P745 Cluster: Putative uncharacterized protein FNV175...    33   2.0  
UniRef50_Q97HE9 Cluster: TRNA nucleotidyltransferase family enzy...    33   2.7  
UniRef50_Q48898 Cluster: Superantigen precursor; n=5; cellular o...    32   4.7  

>UniRef50_Q7P745 Cluster: Putative uncharacterized protein FNV1754;
           n=1; Fusobacterium nucleatum subsp. vincentii ATCC
           49256|Rep: Putative uncharacterized protein FNV1754 -
           Fusobacterium nucleatum subsp. vincentii ATCC 49256
          Length = 559

 Score = 33.5 bits (73), Expect = 2.0
 Identities = 23/79 (29%), Positives = 38/79 (48%)
 Frame = +2

Query: 17  N*YIYSYNRSVSRHVFG*LSERELDYLFVSIKKNSTTKRHLFGIVRDYSVFLNIR*YLHL 196
           N   YS +R V   +F       + Y++VSIKKNS  +  L G+    S+FL       L
Sbjct: 127 NFIFYSASRVVEPTIFRLFFSSIIMYIYVSIKKNS-VRSFLIGLFTIISIFLVYINNTFL 185

Query: 197 LYTMIIYLALVYDASRPNE 253
           +  + IY+ +++   +  E
Sbjct: 186 ILGIAIYILILFFMKQKKE 204


>UniRef50_Q97HE9 Cluster: TRNA nucleotidyltransferase family enzyme;
           n=1; Clostridium acetobutylicum|Rep: TRNA
           nucleotidyltransferase family enzyme - Clostridium
           acetobutylicum
          Length = 393

 Score = 33.1 bits (72), Expect = 2.7
 Identities = 11/28 (39%), Positives = 21/28 (75%)
 Frame = +1

Query: 148 CSRLFGILKYSLIFAFVIYDDYLFSACV 231
           C+R+F  +KYS+ + F I DD++F++ +
Sbjct: 162 CTRIFRAIKYSIRYGFEIEDDFVFNSLI 189


>UniRef50_Q48898 Cluster: Superantigen precursor; n=5; cellular
           organisms|Rep: Superantigen precursor - Mycoplasma
           arthritidis
          Length = 238

 Score = 32.3 bits (70), Expect = 4.7
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +2

Query: 131 RHLFGIVRDYSVFLNIR*YLHLLYTMIIYLALVYDASRPNERRLPHLPTN-S*FDAIDAK 307
           RH FGIV DY+  L    Y  +   M + L++V+D  R     +  +  N +  D I AK
Sbjct: 82  RHAFGIVNDYNGLLE---YKEIFNMMFLKLSVVFDTQRKEANNVEQIKRNIAILDEIMAK 138


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 390,274,926
Number of Sequences: 1657284
Number of extensions: 6554186
Number of successful extensions: 12504
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12503
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21918499148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)