Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_P05
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces...    25   5.1  
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    25   6.7  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   6.7  
SPBC216.03 |||conserved fungal protein|Schizosaccharomyces pombe...    24   8.9  
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    24   8.9  

>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 77

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 131 RHLFGIVRDYSVFLNI 178
           R ++G++R Y +FLNI
Sbjct: 25  RKVYGVLRGYDIFLNI 40


>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 210 LFI*RLCMMRQGQTKDVSPISPPTVNLMQ 296
           LF+ RL ++ Q   K++ PI    +NL+Q
Sbjct: 55  LFLTRLPLLAQAPEKELEPILAVFINLIQ 83


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 337 NIHTSALVSLAFKGRSMRKDPHPSLIYYDNIL 432
           NI+  A+V+L+        DP PS ++ D+ L
Sbjct: 543 NIYERAIVTLSRIASQSTSDPPPSFVFRDDQL 574


>SPBC216.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 247

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -1

Query: 71  ANRIHGDLLTYYNYRYIS 18
           + +IH  + TYY+Y+Y++
Sbjct: 138 SEKIHQSIGTYYHYKYLA 155


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 164 PNSREQYQTGGASLWNFFL 108
           P  RE+    G +LWN+F+
Sbjct: 241 PEQREEVLKMGTNLWNYFV 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,656,159
Number of Sequences: 5004
Number of extensions: 29290
Number of successful extensions: 52
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)