Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_P05
         (437 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1778 + 29451902-29452166,29452665-29452849,29453504-294536...    29   1.6  
05_03_0627 - 16342211-16342264,16342332-16342412,16342751-163428...    29   1.6  
08_02_0924 - 22660615-22660623,22661035-22661193,22661664-226625...    28   3.8  
06_01_0178 + 1386981-1387505                                           27   6.6  
04_04_1335 - 32730516-32730570,32730655-32731154,32731235-327314...    27   6.6  
02_02_0682 - 12923103-12923747,12924607-12924870,12924953-129252...    27   6.6  

>07_03_1778 +
           29451902-29452166,29452665-29452849,29453504-29453693,
           29453990-29454168,29454263-29454314,29454426-29454553,
           29454920-29455099,29455209-29455276,29455364-29455506,
           29455682-29455743,29455874-29455987,29456180-29456320,
           29456680-29456832,29456973-29457026,29457102-29457212,
           29457339-29457512,29457600-29457680,29457788-29457886,
           29457905-29458057
          Length = 843

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 188 LHLLYTMIIYLALVYDASRPNERRLPHLPT 277
           LH+    ++ L LV D S+P  R   H+PT
Sbjct: 563 LHVFLQQVVGLDLVDDESKPERRPTKHMPT 592


>05_03_0627 -
           16342211-16342264,16342332-16342412,16342751-16342849,
           16343660-16343770,16343964-16344116,16344741-16344881,
           16345456-16345513,16345852-16345967,16346292-16346405,
           16346496-16346557,16348788-16348930,16349030-16349097,
           16349200-16349379,16349835-16350013,16350447-16350636,
           16350920-16350978,16351421-16351574,16352133-16352158,
           16352567-16353014
          Length = 811

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 188 LHLLYTMIIYLALVYDASRPNERRLPHLPT 277
           LH+    ++ L LV D S+P  R   H+PT
Sbjct: 640 LHVFLKQVVGLDLVDDESKPERRPTKHMPT 669


>08_02_0924 -
           22660615-22660623,22661035-22661193,22661664-22662539,
           22663009-22663119,22663528-22663556,22663690-22663762,
           22664804-22665100,22665193-22665345,22665979-22666068,
           22667520-22667809,22667860-22668349
          Length = 858

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 26  IYSYNRSVSRHVFG*LSERELDYLFVSIKKNSTTK 130
           +YSY+R   + + G    RELD+   S ++ +T+K
Sbjct: 778 LYSYDRDFVKLITGLSQARELDFAMPSTQETATSK 812


>06_01_0178 + 1386981-1387505
          Length = 174

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 272 GDGGDVFRLALTHHTQALNK*SSYITNANINEY 174
           GDGG V     +  TQ L +    + NANIN Y
Sbjct: 133 GDGGGVRSCTNSRGTQMLMRIRERVVNANINLY 165


>04_04_1335 -
           32730516-32730570,32730655-32731154,32731235-32731416,
           32732673-32732779,32733364-32733395,32733499-32733542,
           32733816-32733977,32734356-32734755
          Length = 493

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 9/43 (20%), Positives = 28/43 (65%)
 Frame = +2

Query: 83  ELDYLFVSIKKNSTTKRHLFGIVRDYSVFLNIR*YLHLLYTMI 211
           +L  +F+   K++++ + ++GI+ +   F+N++ Y  ++Y+ +
Sbjct: 186 QLVLIFILSFKDNSSSQGIYGILSELIWFINVQLYFSMVYSEV 228


>02_02_0682 -
           12923103-12923747,12924607-12924870,12924953-12925219,
           12925301-12925529,12925614-12926295,12926409-12926682,
           12926822-12927347,12927460-12927698,12927799-12927896,
           12928017-12928020,12928657-12928832,12929593-12929647,
           12930787-12931047
          Length = 1239

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 322 AHD*TNIHTSALVSLAFKGRSMRKDPHPSLIYYDNILY 435
           AH  + +  +  +S+  +G+ + + PH  LI Y N  Y
Sbjct: 521 AHRLSTVRNADTISVLHRGQLVEQGPHAELIKYSNGAY 558


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,292,211
Number of Sequences: 37544
Number of extensions: 172086
Number of successful extensions: 301
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)