Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_P05
         (437 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67949-1|AAL06028.2|  633|Caenorhabditis elegans Hypothetical pr...    27   4.5  
U39472-7|AAP86620.2|  339|Caenorhabditis elegans Serpentine rece...    27   7.9  

>U67949-1|AAL06028.2|  633|Caenorhabditis elegans Hypothetical
           protein F55A4.10 protein.
          Length = 633

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 8   EYFN*YIYSYNRSVSRHVFG*LSERELDYLFVSIKKNSTTK 130
           ++F+  + S+N SV RH+F   + R    L + IK +ST +
Sbjct: 364 KHFDNRLESHNTSVGRHLFRSPAARNFPDLSIVIKSDSTNE 404


>U39472-7|AAP86620.2|  339|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 35 protein.
          Length = 339

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 88  RLSIC*YKKKFHNEAPPVWYCSRLFGILKYSLIFAFVIYDDY 213
           ++SIC     F  +A  V Y   +F I  + L+F  ++Y D+
Sbjct: 24  QISICILTLYFSGKAFKVLYRRSVFHISTHQLLFMSIVYADF 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,041,962
Number of Sequences: 27780
Number of extensions: 159077
Number of successful extensions: 348
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)