Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_P05
         (437 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    27   0.068
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    25   0.48 
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           25   0.48 
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   1.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   2.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   4.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   4.5  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 27.5 bits (58), Expect = 0.068
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -3

Query: 132 RFVVEFFFILTNXXXXXXXXX*PNTWRLTDXXXX*IYQLKYSSC 1
           R  +  FF+LT           PN WR+ D     + Q +Y+ C
Sbjct: 3   RITIIRFFVLTTMLMMAIAVELPNNWRICD---RSLPQKEYNQC 43


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 0.48
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 23  YIYSYNRSVSRHVFG*LSERELDYLFVSIKKNSTTKRHLFGIVRD 157
           Y   YN ++ +     ++    +Y F S K + TT +HL  +  D
Sbjct: 370 YFLDYNYTIPKEKHVEVARLIRNYYFESNKIDETTLKHLIDVASD 414


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 0.48
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 23  YIYSYNRSVSRHVFG*LSERELDYLFVSIKKNSTTKRHLFGIVRD 157
           Y   YN ++ +     ++    +Y F S K + TT +HL  +  D
Sbjct: 370 YFLDYNYTIPKEKHVEVARLIRNYYFESNKIDETTLKHLIDVASD 414


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +3

Query: 243 GQTKDVSPI--SPPTVNLMQ*TLKSRL 317
           G T   SP   +PPT+NLM+  L +++
Sbjct: 22  GSTTPASPTLSTPPTLNLMEQILLAKI 48


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
 Frame = +1

Query: 64  RLALRAGARLSIC*YKKKFHNEAPPVWYCSRLFGILKYSLIFAFVIYDDY-LFSACV*CV 240
           R+ L   + L++     K     PPV Y   +   +    +F F+   +Y L +  +   
Sbjct: 276 RVTLGVTSLLTLSTQHAKSQASLPPVSYLKAVDAFMSVCTVFVFMALMEYCLVNIVLGDS 335

Query: 241 KAKRKTSPPSP 273
               K +PP P
Sbjct: 336 DTPPKPAPPPP 346


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 90  IIYLLV*KKIPQRSATCLVLFATIRYS*IFVNICIC 197
           + +LLV + IP  S    +L   + ++ I V+I IC
Sbjct: 288 VFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISIC 323


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 90  IIYLLV*KKIPQRSATCLVLFATIRYS*IFVNICIC 197
           + +LLV + IP  S    +L   + ++ I V+I IC
Sbjct: 288 VFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISIC 323


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,196
Number of Sequences: 438
Number of extensions: 1983
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)