Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_P03
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subuni...    27   1.3  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   5.3  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     25   5.3  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   5.3  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   9.3  

>SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 150

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 269 KNKGIISLILRNQVSHVFRITVYERNSFKNSKVLFNY 379
           KN+G   ++L  +V +   ++ YER  F   K L+ Y
Sbjct: 99  KNRGAQEIVLETEVDNEAAMSFYERLGFCRYKRLYRY 135


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1085

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 530  STSSYTHESNNFKNNYVLLLKYKRNQWR 447
            +TS  + + ++  NNY LL  + +N W+
Sbjct: 1017 TTSGLSRDESSNPNNYELLNAFNQNTWK 1044


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 515 THESNNFKNNYVLLL 471
           THE+NN KN+YV  L
Sbjct: 209 THENNNKKNSYVFRL 223


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 125  YRQILTGVFRQHRVRTSTSLGLVCLPSWTTSSF 223
            YR+ +   F Q  VR     G VC  + T S+F
Sbjct: 1872 YRRTIADKFLQGDVRDQAFYGFVCCSTTTNSAF 1904


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 344  NSFKNSKVLFNYSTKVLFSYSVFTNSALSVIHQNDAID 457
            N+++ S V        L SYS    SAL+ I +   +D
Sbjct: 1272 NAYERSSVCVCREVNELISYSTIMQSALTTIGETTDVD 1309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,130,227
Number of Sequences: 5004
Number of extensions: 42139
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)