Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_P03
         (530 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77136-5|CAB00882.1| 1152|Caenorhabditis elegans Hypothetical pr...    33   0.097
Z93374-5|CAB07557.1|  935|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z68121-1|CAA92204.2|  174|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AF302237-1|AAG21385.1|  174|Caenorhabditis elegans GATA-type tra...    27   6.3  
Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U00044-5|AAK93857.1|  174|Caenorhabditis elegans Mesoderm and en...    27   8.4  
AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotei...    27   8.4  
AF302238-1|AAG21386.1|  174|Caenorhabditis elegans GATA-type tra...    27   8.4  

>Z77136-5|CAB00882.1| 1152|Caenorhabditis elegans Hypothetical
           protein ZC376.6 protein.
          Length = 1152

 Score = 33.5 bits (73), Expect = 0.097
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +2

Query: 287 SLILRNQVSHVFRITVYERNSFKNSKVLFNYSTKVLFSYSVFTNSALSVIHQN 445
           S+ L+  V ++  +  Y+   F+N +        VLFSYS+ T  ++ ++ +N
Sbjct: 699 SIFLKLPVRYILSVMEYQHEKFENVRSKITARAAVLFSYSLPTPESMQIVAEN 751


>Z93374-5|CAB07557.1|  935|Caenorhabditis elegans Hypothetical
           protein C06C6.7 protein.
          Length = 935

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
 Frame = +2

Query: 275 KGIISLI--LRNQVSHVFRITVYERNSFKNSKVLFNYSTKVLFSYSVFTNSALSVIHQND 448
           K IIS+I  L+  +  +  I+V   NS  N+    +YS++  F  +V  +   S I+ N+
Sbjct: 4   KSIISMIILLKITIFGIITISVECVNSNINNNESLDYSSRRQFVRAVNPHDKHSNINNNE 63

Query: 449 AIDYA 463
           ++DY+
Sbjct: 64  SLDYS 68


>Z68121-1|CAA92204.2|  174|Caenorhabditis elegans Hypothetical
           protein T24D3.1 protein.
          Length = 174

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 349 TITLIYSYSENMRDLIS*YKTYYPFVFTRYRLS-ALTTISPD 227
           + T  YSY  N  D ++ Y +YYP       L+ + TT SP+
Sbjct: 35  SFTTDYSYYNNYYDYVNTYASYYPTAMDSSSLNISSTTGSPN 76


>AF302237-1|AAG21385.1|  174|Caenorhabditis elegans GATA-type
           transcription factor protein.
          Length = 174

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 349 TITLIYSYSENMRDLIS*YKTYYPFVFTRYRLS-ALTTISPD 227
           + T  YSY  N  D ++ Y +YYP       L+ + TT SP+
Sbjct: 35  SFTTDYSYYNNYYDYVNTYASYYPTAMDSSSLNISSTTGSPN 76


>Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical
           protein F22E10.3 protein.
          Length = 1327

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = -1

Query: 263 VQAQCFDHNLT*Y*MTMWSRRV-STLSLETYWFSRDAAGTHLLVFGDSFSNLR 108
           +Q  CF H  T     M  R V S L     WF ++ +GT      DS   +R
Sbjct: 167 IQYMCFQHCCTRVMAQMRHRFVYSVLRQNAGWFDKNHSGTITTKLNDSMERIR 219


>U00044-5|AAK93857.1|  174|Caenorhabditis elegans Mesoderm and
           endoderm determinationprotein 2 protein.
          Length = 174

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 349 TITLIYSYSENMRDLIS*YKTYYPFVFTRYRLS-ALTTISPD 227
           + T  YSY  N  D ++ Y +YYP       L+ + TT SP+
Sbjct: 35  SFTTDYSYYNNYYDYVNTYASYYPTAMDSSSLNISPTTGSPN 76


>AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotein
           related (146.8 kD)(pgp-14) protein.
          Length = 1327

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = -1

Query: 263 VQAQCFDHNLT*Y*MTMWSRRV-STLSLETYWFSRDAAGTHLLVFGDSFSNLR 108
           +Q  CF H  T     M  R V S L     WF ++ +GT      DS   +R
Sbjct: 167 IQYMCFQHCCTRVMAQMRHRFVYSVLRQNAGWFDKNHSGTITTKLNDSMERIR 219


>AF302238-1|AAG21386.1|  174|Caenorhabditis elegans GATA-type
           transcription factor protein.
          Length = 174

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 349 TITLIYSYSENMRDLIS*YKTYYPFVFTRYRLS-ALTTISPD 227
           + T  YSY  N  D ++ Y +YYP       L+ + TT SP+
Sbjct: 35  SFTTDYSYYNNYYDYVNTYASYYPTAMDSSSLNISPTTGSPN 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,602,371
Number of Sequences: 27780
Number of extensions: 232508
Number of successful extensions: 510
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)