Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_P02
         (413 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q22N13 Cluster: Cation channel family protein; n=1; Tet...    33   3.1  
UniRef50_Q583X9 Cluster: ATP-dependent DEAH-box RNA helicase, pu...    32   5.3  
UniRef50_A6XMW6 Cluster: Polyprotein; n=23; Banana bract mosaic ...    31   7.1  
UniRef50_Q8IAP1 Cluster: Putative uncharacterized protein MAL8P1...    31   7.1  

>UniRef50_Q22N13 Cluster: Cation channel family protein; n=1;
           Tetrahymena thermophila SB210|Rep: Cation channel family
           protein - Tetrahymena thermophila SB210
          Length = 1152

 Score = 32.7 bits (71), Expect = 3.1
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 410 FRTISHCVIYFYKYSMENNVFIAII-FYLIYIGL 312
           FRT++H +IYFY    E   FI II FY +   L
Sbjct: 734 FRTVNHLIIYFYDTICELFYFIVIIVFYCVLFAL 767


>UniRef50_Q583X9 Cluster: ATP-dependent DEAH-box RNA helicase,
           putative; n=3; Trypanosoma|Rep: ATP-dependent DEAH-box
           RNA helicase, putative - Trypanosoma brucei
          Length = 1440

 Score = 31.9 bits (69), Expect = 5.3
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 74  NPRKKIILMKPCTKFDSFVGFIGMC--LNLRGSTYQLPVR 187
           NPR K++LM    + D F  + G    +++ G+TY + VR
Sbjct: 697 NPRLKVVLMSATMQSDMFASYFGRAPVISVEGATYPVEVR 736


>UniRef50_A6XMW6 Cluster: Polyprotein; n=23; Banana bract mosaic
            virus|Rep: Polyprotein - Banana bract mosaic virus
          Length = 3125

 Score = 31.5 bits (68), Expect = 7.1
 Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = -3

Query: 153  FKHMPINPTNESNFV-HGFINII 88
            F HM I+ TN+SN V HGF+N++
Sbjct: 1794 FSHMDIDITNKSNLVPHGFLNLV 1816


>UniRef50_Q8IAP1 Cluster: Putative uncharacterized protein MAL8P1.139;
            n=3; root|Rep: Putative uncharacterized protein
            MAL8P1.139 - Plasmodium falciparum (isolate 3D7)
          Length = 5910

 Score = 31.5 bits (68), Expect = 7.1
 Identities = 14/52 (26%), Positives = 30/52 (57%)
 Frame = +1

Query: 19   VEVIKSTLVYFYSKKMITEPA*KNYINETVYKIRFICWIYWHVFEFERKYVS 174
            V+   ST++Y + K  I +    +++ +   K +FI +I ++  E++ KY+S
Sbjct: 4367 VDQSNSTILYIHKKNKIKKICILDHLKKLNKKCKFINYISYNDIEYDNKYIS 4418


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 380,542,058
Number of Sequences: 1657284
Number of extensions: 7367054
Number of successful extensions: 14256
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14256
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 19042509735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)