Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_P02
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    25   3.5  
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    25   4.7  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    24   8.1  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         24   8.1  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    24   8.1  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    24   8.1  

>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +2

Query: 92  ILMKPCTKFDSFVGFIGMCLNLRGSTYQLPVRTKNNLWS 208
           I  KP    D   G IG C  L  S Y    + +NN W+
Sbjct: 9   ISKKPSVSLD--YGIIGACQLLNPSGYHRAEKVENNEWT 45


>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 104 PCTKFDSFVGFIGMCLNLRGSTY-QLPVRTKNNLWSD 211
           PC  F   +G IG+C  +R +T+   P+   N   +D
Sbjct: 10  PCFAFVDTIGSIGVCRVVRFTTFHNTPIEVYNKKVND 46


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 344 AIIFYLIYIGLTHLYNTNNGK 282
           +I + ++ IG+T +Y  NNGK
Sbjct: 57  SIRYTILQIGITFIYLQNNGK 77


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
 Frame = -1

Query: 383 YFYKYSME-----NNVFIAIIFYLIYIGLTHLYNTNNG 285
           YF+KY +      +NV      +  + G+T L N NNG
Sbjct: 597 YFFKYHLHKVVVSDNVHDPAASFSTFDGITELNNMNNG 634


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 98  MKPCTKFDSFVGFIGMCLNLRGSTYQLPV 184
           +K  +KF+SF GF+    + + S   LP+
Sbjct: 172 LKESSKFESFFGFVRSIQSFKDSETGLPL 200


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 7/18 (38%), Positives = 15/18 (83%)
 Frame = -1

Query: 404 TISHCVIYFYKYSMENNV 351
           ++S CV++F+KY+ ++ V
Sbjct: 767 SMSLCVVFFHKYNFQDEV 784


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,699,475
Number of Sequences: 5004
Number of extensions: 35121
Number of successful extensions: 64
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)