Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_P02
         (413 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0154 + 20707811-20708210,20709252-20709523                       27   7.8  
05_04_0140 - 18358997-18359082,18359255-18359318,18359469-183595...    27   7.8  

>11_06_0154 + 20707811-20708210,20709252-20709523
          Length = 223

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -3

Query: 147 HMPINPTNESNFVHGFINIIFLRGFSYHFLRIKVD*CTLYNFNVAETS 4
           H  +   +E NF  G+IN+I+    S++ + + +    L NFN  + S
Sbjct: 153 HSFVLQPSELNFEVGYINVIYSSIDSWNEIMVVIQCPDLINFNPVDIS 200


>05_04_0140 -
           18358997-18359082,18359255-18359318,18359469-18359583,
           18360101-18360216,18360420-18360541,18360628-18360757,
           18361328-18361420
          Length = 241

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 8/35 (22%), Positives = 22/35 (62%)
 Frame = -1

Query: 371 YSMENNVFIAIIFYLIYIGLTHLYNTNNGKPFTIN 267
           Y++  NV++  +  +++  LT+++N N  + F ++
Sbjct: 152 YTIHGNVYLVFLVLVLFSCLTYVHNANGIESFNLS 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,230,307
Number of Sequences: 37544
Number of extensions: 165239
Number of successful extensions: 248
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)