Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_P02
         (413 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC111945-1|AAI11946.1|  748|Homo sapiens SMAD specific E3 ubiqui...    31   2.0  
BC093876-1|AAH93876.1|  748|Homo sapiens SMAD specific E3 ubiqui...    31   2.0  
BC009527-1|AAH09527.1|  288|Homo sapiens SMURF2 protein protein.       31   2.0  
AY014180-1|AAG50421.1|  748|Homo sapiens E3 ubiquitin ligase Smu...    31   2.0  
AF310676-1|AAG45422.1|  748|Homo sapiens E3 ubiquitin ligase SMU...    31   2.0  
AF301463-1|AAG25641.1|  748|Homo sapiens ubiquitin E3 ligase SMU...    31   2.0  

>BC111945-1|AAI11946.1|  748|Homo sapiens SMAD specific E3 ubiquitin
           protein ligase 2 protein.
          Length = 748

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 150 KHMPINPTNESNFVHGFINIIFLRGFSYHFLRIK 49
           K +P+N  N+  +V  ++N  FLRG    FL ++
Sbjct: 569 KSIPVNEENKKEYVRLYVNWRFLRGIEAQFLALQ 602


>BC093876-1|AAH93876.1|  748|Homo sapiens SMAD specific E3 ubiquitin
           protein ligase 2 protein.
          Length = 748

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 150 KHMPINPTNESNFVHGFINIIFLRGFSYHFLRIK 49
           K +P+N  N+  +V  ++N  FLRG    FL ++
Sbjct: 569 KSIPVNEENKKEYVRLYVNWRFLRGIEAQFLALQ 602


>BC009527-1|AAH09527.1|  288|Homo sapiens SMURF2 protein protein.
          Length = 288

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 150 KHMPINPTNESNFVHGFINIIFLRGFSYHFLRIK 49
           K +P+N  N+  +V  ++N  FLRG    FL ++
Sbjct: 109 KSIPVNEENKKEYVRLYVNWRFLRGIEAQFLALQ 142


>AY014180-1|AAG50421.1|  748|Homo sapiens E3 ubiquitin ligase Smurf2
           protein.
          Length = 748

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 150 KHMPINPTNESNFVHGFINIIFLRGFSYHFLRIK 49
           K +P+N  N+  +V  ++N  FLRG    FL ++
Sbjct: 569 KSIPVNEENKKEYVRLYVNWRFLRGIEAQFLALQ 602


>AF310676-1|AAG45422.1|  748|Homo sapiens E3 ubiquitin ligase SMURF2
           protein.
          Length = 748

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 150 KHMPINPTNESNFVHGFINIIFLRGFSYHFLRIK 49
           K +P+N  N+  +V  ++N  FLRG    FL ++
Sbjct: 569 KSIPVNEENKKEYVRLYVNWRFLRGIEAQFLALQ 602


>AF301463-1|AAG25641.1|  748|Homo sapiens ubiquitin E3 ligase SMURF2
           protein.
          Length = 748

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 150 KHMPINPTNESNFVHGFINIIFLRGFSYHFLRIK 49
           K +P+N  N+  +V  ++N  FLRG    FL ++
Sbjct: 569 KSIPVNEENKKEYVRLYVNWRFLRGIEAQFLALQ 602


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,897,304
Number of Sequences: 237096
Number of extensions: 1024743
Number of successful extensions: 4876
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4876
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3087725076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)