Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_P02
         (413 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61948-5|AAB03149.2|  509|Caenorhabditis elegans Hypothetical pr...    29   1.3  
AF039053-12|AAC25872.3|  289|Caenorhabditis elegans Serpentine r...    28   2.3  
AJ582073-1|CAE46543.1|  518|Caenorhabditis elegans flavin monoox...    27   4.1  
AC006663-1|AAF39901.1|  518|Caenorhabditis elegans Flavin-contai...    27   4.1  
Z81139-5|CAB03481.2|  359|Caenorhabditis elegans Hypothetical pr...    27   5.4  
AF016675-3|AAB66138.2|  396|Caenorhabditis elegans Hypothetical ...    27   7.1  
Z68119-6|CAE17916.1|  181|Caenorhabditis elegans Hypothetical pr...    26   9.4  
AF068709-7|AAO26014.1|  317|Caenorhabditis elegans Serpentine re...    26   9.4  

>U61948-5|AAB03149.2|  509|Caenorhabditis elegans Hypothetical
           protein C46A5.2 protein.
          Length = 509

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 43  VYFYSKKMITEPA*KNYINETVYKIRFICWIYWHVFEFERKYVSTSCSYQ 192
           V FY K MI  P       + +Y+ +F C++Y  + +   +Y  T   Y+
Sbjct: 333 VRFYQKSMILLPKSDGCSTDPIYQGKFTCFVYKWLMQLIEQYNCTVPYYK 382


>AF039053-12|AAC25872.3|  289|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 18 protein.
          Length = 289

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 8/33 (24%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
 Frame = -1

Query: 389 VIYFYKYSMENNVFIAIIFY-LIYIGLTHLYNT 294
           +++++++ ++ ++ + +IFY L+ I L++ +NT
Sbjct: 44  ILFYFRFFLDASIGLLVIFYLLVVISLSYFWNT 76


>AJ582073-1|CAE46543.1|  518|Caenorhabditis elegans flavin
           monooxygenase protein.
          Length = 518

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 126 NESNFVHGFINIIFLRGFSYHF 61
           ++ +FV G   +I   GFSYHF
Sbjct: 316 DDGSFVEGVDEVILATGFSYHF 337


>AC006663-1|AAF39901.1|  518|Caenorhabditis elegans
           Flavin-containing monooxygenasefamily protein 5 protein.
          Length = 518

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 126 NESNFVHGFINIIFLRGFSYHF 61
           ++ +FV G   +I   GFSYHF
Sbjct: 316 DDGSFVEGVDEVILATGFSYHF 337


>Z81139-5|CAB03481.2|  359|Caenorhabditis elegans Hypothetical
           protein W05H5.6 protein.
          Length = 359

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 386 IYFYKYSMENNVFIAIIFYLIYIGLTHLYNTN 291
           ++FY   ++  V I+I+  +IY+   HL N +
Sbjct: 18  VFFYVEPLDQQVIISILELMIYLVCIHLVNVS 49


>AF016675-3|AAB66138.2|  396|Caenorhabditis elegans Hypothetical
           protein T27B7.6 protein.
          Length = 396

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +1

Query: 139 WHVFEFERKYVSTSCSYQK 195
           WHVF    KYV+TS +YQK
Sbjct: 216 WHVFSKLHKYVATS-AYQK 233


>Z68119-6|CAE17916.1|  181|Caenorhabditis elegans Hypothetical
           protein T18D3.9 protein.
          Length = 181

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 171 INFLFVPKIIYGLIINRV*YFLPNCHLTRST 263
           +N  FVP + Y +I+N+V  F  NC+L+  T
Sbjct: 141 VNLCFVP-LNYRVILNQVVAFFWNCYLSYIT 170


>AF068709-7|AAO26014.1|  317|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 60 protein.
          Length = 317

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 350 FIAIIFYLIYIGLTHLYNTN 291
           FI +IF+LIY+G + +Y  +
Sbjct: 33  FILMIFFLIYLGYSKMYTNS 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,034,669
Number of Sequences: 27780
Number of extensions: 184105
Number of successful extensions: 360
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)