Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_P01
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    47   2e-06
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    29   0.45 
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    28   0.78 
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces...    27   2.4  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    26   4.2  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    25   5.5  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    25   7.3  

>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 28/108 (25%), Positives = 49/108 (45%)
 Frame = +2

Query: 104 YVLDLKKNYLEIAEEERHDIIPEIWEGHNIADYIDLDIFDXXXXXXXXXXXXXXGGMYAV 283
           Y ++L+  Y+      ++D +PE+ +G N+AD++D +I                 G Y  
Sbjct: 412 YNVELRDKYILQDPSWKYDRMPELLDGKNVADFVDPEIEAKLLALDEEEERLEREGYYDS 471

Query: 284 PKIELDETMREIKELARQIRNKKAILKDESRLVKQSTKPVMPRNSRAR 427
            +   D    E+ E A +IR K  +    +R  K   +PV+PR +  R
Sbjct: 472 DQEIEDADEEEVLEKASRIREKNKLTMLAARQKKIKNRPVLPRTAGIR 519


>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +2

Query: 293 ELDETMREIKELARQIRNKKAILKDESRLVKQSTKPVMPRNSRARDKGRSA 445
           +LDE   E+ ELA ++ +   ++   S L  QS   ++P +   +D    A
Sbjct: 147 DLDEVPTELNELANEVVDVDDVVSPSSELNAQSVNNILPISDDPKDSTSEA 197


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 15/73 (20%), Positives = 37/73 (50%)
 Frame = +2

Query: 287 KIELDETMREIKELARQIRNKKAILKDESRLVKQSTKPVMPRNSRARDKGRSAGKLREEM 466
           ++++ ET+ ++  L  Q       LK++   ++   + +       R++ + + KLR  +
Sbjct: 480 QLQMKETVNKLTSLQEQNNEFDRQLKEQEEDLQNKEEELTELRKLLREQTQDSQKLRLLV 539

Query: 467 EKLGVDMSETKQA 505
           E+L ++  + KQA
Sbjct: 540 EQLELERQDLKQA 552


>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
 Frame = +2

Query: 278 AVPK-IELDETMREIKELARQIRNKKAILKDESRLVKQSTKPVMPRNSRA--RDKGRSAG 448
           A+P+ I+ +E     KEL   +   K+       +  Q  KP +P+NS     D+   A 
Sbjct: 291 AIPRRIQPEEQADYEKELNDHVNIVKSSTYIPISIPTQKQKPTLPKNSNLINEDEFSIAN 350

Query: 449 KLREEMEKLGVDMSETKQ 502
           + R E E L  D +E ++
Sbjct: 351 RARLEREYLQSDDAEEQE 368


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
 Frame = +1

Query: 280 GAQDRAGRDHAG--------DQGAGPADQEQEGDPEGRVEAREAIHEAGDAAEQPRPGQG 435
           G  D +G  H+G        D  AG    ++    E   E+ E   E  +  E     Q 
Sbjct: 316 GVMDASGNHHSGSSNQSINADSSAGSEGVDEGTSTEANDESSEDDDEDNNTDEANEDAQS 375

Query: 436 PLRRETPGGNGKTRRGHV 489
            +  E+P G G +   +V
Sbjct: 376 NVSDESPKGEGSSHSDNV 393


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 198 ITLIWIYSINWQNWRRRRS*GKPVGCTR 281
           +T +W+ S+ W+ W        P+G +R
Sbjct: 420 VTFVWVNSLQWKTWISHTFHIDPMGPSR 447


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = +2

Query: 314 EIKELARQIRNKKAILKDESRLVKQSTKPVMPRNSRARDKGRSAGKLREEMEKLG 478
           +I  + R +  KKAI+K   RLV          N +    G S   ++++  + G
Sbjct: 201 KIHGVHRPVTMKKAIIKRRKRLVFNGNANESQHNLKRMSSGDSGSSVKQQSTRDG 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,840,665
Number of Sequences: 5004
Number of extensions: 31970
Number of successful extensions: 79
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)