Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_O24
(595 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0312 + 2764744-2767390,2767632-2767990 34 0.098
11_02_0037 - 7613632-7613727,7614452-7615507 30 1.6
11_05_0096 - 19029632-19029937,19030376-19031197 29 2.1
06_02_0238 - 13357877-13357954,13358186-13358302,13358537-133586... 29 2.1
12_01_0221 + 1671231-1671349,1671613-1671745,1672011-1672190,167... 29 2.8
02_05_0587 + 30162806-30163183,30163315-30163478,30163571-301636... 29 2.8
02_05_0688 - 30918499-30919602 28 4.9
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815... 28 4.9
01_04_0109 + 16112581-16112934 28 4.9
07_03_1361 - 25998873-25999223,25999311-25999461,25999546-259997... 28 6.5
06_01_0936 - 7220333-7220508,7221208-7221327,7221898-7223089 28 6.5
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432... 28 6.5
01_06_0240 + 27794741-27795466 28 6.5
12_01_0281 + 2059397-2059721,2059807-2060675,2086761-2086910 27 8.5
08_02_0669 + 19868149-19870179 27 8.5
01_06_0579 + 30379243-30379617 27 8.5
>08_01_0312 + 2764744-2767390,2767632-2767990
Length = 1001
Score = 33.9 bits (74), Expect = 0.098
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = -2
Query: 417 SGSTAGSSPVRASAAYPLARSQAWRKSLAASVPDTAWMHACLNGV-ISNNRLIGRSGEIP 241
S S +G+ P A L Q W SLA +P++ L + +S N L SG IP
Sbjct: 330 SNSLSGTIPAAIGALPSLEVLQLWNNSLAGRLPESLGASRRLVRLDVSTNSL---SGPIP 386
Query: 240 PNTCSQAGGRAA 205
P C AG R A
Sbjct: 387 PGVC--AGNRLA 396
>11_02_0037 - 7613632-7613727,7614452-7615507
Length = 383
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +2
Query: 77 PYDDFRLPNGKICTSESEFGNAYSLARSCPKVQTPE-HSHHQMHAALPP 220
P+ + G + +G AY+ AR+ P P H HH H + P
Sbjct: 223 PHHHHKNGGGLLVAGGDPYGAAYAAARALPPPPPPPPHGHHHHHQIIMP 271
>11_05_0096 - 19029632-19029937,19030376-19031197
Length = 375
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 335 KDLRQACDLARGYAALALTGLLPAVLPDACVRCTDADKPHAIGD 466
+ LR D+ G+ A+A + A PD ++CT D PH + D
Sbjct: 206 RGLRSLVDVGGGHGAVAKA--IAAAFPD--IKCTVMDLPHVVAD 245
>06_02_0238 -
13357877-13357954,13358186-13358302,13358537-13358641,
13359301-13359393,13359801-13359888,13359979-13360028,
13361147-13361205,13361297-13361516,13361611-13361691,
13364034-13364111,13364203-13364298,13364370-13364435
Length = 376
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = +2
Query: 275 LDITPFRQACIHAVSGTDAAKDLR 346
LDIT RQ +H VSGTD KD+R
Sbjct: 168 LDIT--RQFLLHIVSGTDVEKDVR 189
>12_01_0221 +
1671231-1671349,1671613-1671745,1672011-1672190,
1672632-1672712,1672850-1673013,1673109-1673245,
1673492-1673607,1673725-1673958
Length = 387
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 238 RRNLPTSANQSIIRYHTIQTSVHPRGVRNR 327
+ NL + +S++RYH + TS G+R R
Sbjct: 196 KSNLNCTIKESLVRYHDVVTSAKKHGIRIR 225
>02_05_0587 +
30162806-30163183,30163315-30163478,30163571-30163654,
30163737-30163794,30164092-30164145,30164244-30164309,
30164310-30164381,30164547-30164627,30165361-30165533,
30165916-30166018,30166148-30166279,30166432-30166554,
30166898-30167002,30167397-30167722,30167919-30168258,
30169973-30170113,30170589-30170801,30170901-30171119,
30171272-30171619,30171711-30172043,30172548-30172601
Length = 1188
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/49 (40%), Positives = 27/49 (55%)
Frame = -2
Query: 396 SPVRASAAYPLARSQAWRKSLAASVPDTAWMHACLNGVISNNRLIGRSG 250
SPVRASAA A + A R++ AA VP + + L +S R + SG
Sbjct: 36 SPVRASAASASASAPAQREAAAAGVPWGCEIES-LESAVSLERWLTDSG 83
>02_05_0688 - 30918499-30919602
Length = 367
Score = 28.3 bits (60), Expect = 4.9
Identities = 27/94 (28%), Positives = 43/94 (45%)
Frame = +2
Query: 266 SLLLDITPFRQACIHAVSGTDAAKDLRQACDLARGYAALALTGLLPAVLPDACVRCTDAD 445
SL +I PFR AV+G +A +R A + YA L LLP +P A +D
Sbjct: 115 SLRFEIYPFR---ADAVTGLISA-SVRAALEAPLNYARNYLADLLPKCVPRAIYLDSDVL 170
Query: 446 KPHAIGDVYQLKVPNKQADIVVSFETTQSNEQSY 547
+ +++ ++P A +V + E +N Y
Sbjct: 171 AVDDVRRLWETRLP--AAAVVAAPEYCHANFSRY 202
>01_06_0213 +
27580635-27581105,27581206-27581298,27581376-27581540,
27581640-27581862,27582329-27582429,27582666-27582713,
27583086-27583172,27583745-27583879,27583985-27584140,
27585336-27585545,27585641-27586351,27586429-27586974,
27587872-27588495,27588595-27588699,27590460-27590711,
27590939-27591766
Length = 1584
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 420 ASGSTAGSSPVRASAAY-PLARSQAWRKSLAASVPDTAWMHACLNG 286
+S +T+ SPVRAS+ Y + + A K + S +W+H G
Sbjct: 723 SSANTSSDSPVRASSEYHEVPPTDAEDKEIDESNQGESWVHGLAEG 768
>01_04_0109 + 16112581-16112934
Length = 117
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = +2
Query: 206 AALPPACEQVFGG----ISPLRPISLLLDITPFRQACIHAVSGTDAAKDLRQ 349
AA P +V+ G +SP P S+ L PFR+A + A A +DLR+
Sbjct: 62 AAARPVAVEVYAGPAFSVSP-EPSSVPLPQFPFRKAAVTAAVDDAATRDLRR 112
>07_03_1361 -
25998873-25999223,25999311-25999461,25999546-25999783,
25999898-26000108,26000210-26000340,26000909-26001037,
26001329-26002130
Length = 670
Score = 27.9 bits (59), Expect = 6.5
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Frame = -2
Query: 447 LSASVQRTQASGSTAGSSPVRASAAYPLARSQAW-RKSLA-----ASVPDT-AWMHACLN 289
L+A+ T A+ G+ + YP+ S AW +A A + DT A MHA N
Sbjct: 165 LNATADYTAAAARRFGTGEISFDPTYPVIYSMAWCTPDMAPGRCRACLADTIAQMHAYFN 224
Query: 288 GVISNNRLIG 259
RL+G
Sbjct: 225 PNAQGARLVG 234
>06_01_0936 - 7220333-7220508,7221208-7221327,7221898-7223089
Length = 495
Score = 27.9 bits (59), Expect = 6.5
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Frame = -1
Query: 463 SDG-VRLVRVGAAHASVRQHSRQQSREGQRRVSSRQVTG-----LAQVLSGVCSGHRVDA 302
SDG +RL + A A VR+ S S +G+ S+ VTG LA G+ S H+ D
Sbjct: 52 SDGHIRLWPLDMAMAMVREESTSSSSQGEVSRSTVAVTGSPVKCLAATGDGLVSSHQ-DG 110
Query: 301 RLSEW 287
+ W
Sbjct: 111 TIRVW 115
>02_05_0232 + 27041793-27042087,27042822-27042943,27043098-27043219,
27043601-27043705,27043828-27044257,27044356-27044517,
27044565-27045260,27045349-27046128,27046441-27046654,
27047621-27047981,27047993-27048140,27048276-27048419,
27048784-27048888,27049749-27049794,27050089-27050255,
27050338-27050490,27050654-27050950,27051053-27051220,
27051298-27051363,27051451-27051927,27052031-27052768,
27052935-27053120
Length = 1993
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/95 (21%), Positives = 45/95 (47%)
Frame = +2
Query: 263 ISLLLDITPFRQACIHAVSGTDAAKDLRQACDLARGYAALALTGLLPAVLPDACVRCTDA 442
++ ++D T +++ +H+ +D+ ACD + L + +L +AC R +
Sbjct: 1267 LAAIVDDTNKQRSVMHSPQESDSVNFSSPACDPQQEEEEPNLDEDMHDILNEACTRA-EL 1325
Query: 443 DKPHAIGDVYQLKVPNKQADIVVSFETTQSNEQSY 547
K G+ K + D++++ + Q +E+SY
Sbjct: 1326 LKKEVDGE--SSKRRKAEMDLLIALQRVQESEKSY 1358
>01_06_0240 + 27794741-27795466
Length = 241
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 398 LPAVLPDACVRCTDADKPHAIGDV 469
+PA P A VRCT A KP A G +
Sbjct: 24 IPAATPSAIVRCTAAPKP-ATGSI 46
>12_01_0281 + 2059397-2059721,2059807-2060675,2086761-2086910
Length = 447
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -2
Query: 450 GLSASVQRTQASGSTAGSSPVRASAAYPLARSQAWRKSLAASVPD 316
G SAS+ + + + SPVR PLA + + ++ SV D
Sbjct: 329 GASASIDQVAKTAARVFGSPVRQPVVSPLAPGKEKKTAVETSVSD 373
>08_02_0669 + 19868149-19870179
Length = 676
Score = 27.5 bits (58), Expect = 8.5
Identities = 28/91 (30%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Frame = -2
Query: 450 GLSASVQRTQASGSTAGSSPVRASAAYPLARSQAWRKSLAASVPDTAWMHACLNGVISNN 271
G A+ +G A S R AA L QAWR AA PD A + + +
Sbjct: 117 GSVATAMDVLPAGVVAASDDAREFAA--LVSQQAWR---AAVRPDEEDSRAARS--VRSM 169
Query: 270 RLIGRSGEIPPNTCSQAG-GRAACIWWWECS 181
RSG P ++ GR WW+CS
Sbjct: 170 LARFRSGATPDAEDARLVLGRVGVASWWDCS 200
>01_06_0579 + 30379243-30379617
Length = 124
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 198 RCTLLCHQPVNRCSEESPH 254
RCT+ CH P+ R S SPH
Sbjct: 10 RCTISCHSPMRRSS--SPH 26
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,662,718
Number of Sequences: 37544
Number of extensions: 362253
Number of successful extensions: 1264
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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