Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_O23
(572 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 242 2e-65
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 242 2e-65
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 242 2e-65
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 26 4.5
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch... 26 4.5
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar... 26 4.5
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 26 4.5
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 25 6.0
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 25 7.9
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 242 bits (593), Expect = 2e-65
Identities = 110/161 (68%), Positives = 135/161 (83%)
Frame = +3
Query: 87 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 266
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 267 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 446
V FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119
Query: 447 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKEVLPSS 569
GDRG L R+SGN+ ++GH+ D +TRVKLPSGAK+V+PSS
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSS 160
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 242 bits (593), Expect = 2e-65
Identities = 110/161 (68%), Positives = 135/161 (83%)
Frame = +3
Query: 87 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 266
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 267 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 446
V FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119
Query: 447 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKEVLPSS 569
GDRG L R+SGN+ ++GH+ D +TRVKLPSGAK+V+PSS
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSS 160
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 242 bits (593), Expect = 2e-65
Identities = 110/161 (68%), Positives = 135/161 (83%)
Frame = +3
Query: 87 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 266
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 267 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 446
V FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119
Query: 447 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKEVLPSS 569
GDRG L R+SGN+ ++GH+ D +TRVKLPSGAK+V+PSS
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSS 160
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 25.8 bits (54), Expect = 4.5
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Frame = -2
Query: 499 PITVAKLPEARASRPRSPIFSSKLHTIV--PSGIA---PTGITLPTSRVAFLPQ*TN*PV 335
P +A LP R+ FSSK ++ P +A IT P+S V +PQ T+
Sbjct: 272 PWFIADLPTHSRLPSRTSSFSSKHRSVTFSPPDLAILFDPSITSPSSSVGQIPQPTDHSA 331
Query: 334 *RPSGAMNSS 305
PS M+ S
Sbjct: 332 LSPSKPMSIS 341
>SPAC17G8.11c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 25.8 bits (54), Expect = 4.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 510 PDCDL*LWQNCQRREPVVLDHPSFLPNY 427
PD + LW + RE + D+P FL Y
Sbjct: 86 PDYEYVLWTDESMREFIATDYPWFLTQY 113
>SPCC1393.08 |||transcription factor, zf-GATA type
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.8 bits (54), Expect = 4.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2
Query: 353 LWQESNSRSWQCNACGCYA 409
LW++ CNACG YA
Sbjct: 429 LWRKDRHGQTVCNACGLYA 447
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 4.5
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +2
Query: 353 LWQESNSRSWQCNACGCY 406
LW+ S CNACG Y
Sbjct: 22 LWRRGPDNSLLCNACGLY 39
Score = 25.0 bits (52), Expect = 7.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 353 LWQESNSRSWQCNACGCY 406
LW+ S + CNACG Y
Sbjct: 182 LWRRDESGNPICNACGLY 199
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 6.0
Identities = 24/86 (27%), Positives = 36/86 (41%)
Frame = -1
Query: 542 RWKLYSRTFGVRIVTYNCGKIARGASQSSSITHLFFQITHNCTFRHSTHRHYIANF*SCF 363
RW L+ GV +T++ K+ A ++ F I +HS H N CF
Sbjct: 106 RWLLHRIPGGV--ITWSTYKLFDEAETRANYPVRGFDIFMKHATKHSCH----FNILKCF 159
Query: 362 LATVNKLTSIKTFWSNEQFFARLELV 285
L + L++ SN + LELV
Sbjct: 160 LKLLMSLSAKLAVSSNSSTVSSLELV 185
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.0 bits (52), Expect = 7.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 108 QRKGAGSVFVSHTKKRKGAPKLRSLD 185
+R+G+ +HTK+ K APK D
Sbjct: 167 KRRGSVGTTATHTKRSKNAPKTSPKD 192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,512,389
Number of Sequences: 5004
Number of extensions: 53578
Number of successful extensions: 139
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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