Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_O23
         (572 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                      247   4e-66
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534...    29   2.0  
11_01_0657 + 5322295-5323367,5323436-5323555,5323743-5323791,532...    29   2.0  
03_04_0174 - 18044516-18046327                                         28   6.1  
11_06_0377 - 22900042-22900452,22900527-22902236                       27   8.0  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score =  247 bits (605), Expect = 4e-66
 Identities = 109/161 (67%), Positives = 136/161 (84%)
 Frame = +3

Query: 87  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 266
           MGRVIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60

Query: 267 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 446
           V FR P+++K +KELF+A EG+YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E  +
Sbjct: 61  VTFRHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHV 120

Query: 447 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKEVLPSS 569
           GDRG  ARASG++A VI HNPD   +R+KLPSGAK+++PSS
Sbjct: 121 GDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSS 161


>11_01_0658 +
           5342508-5343602,5343697-5343764,5343994-5344042,
           5344217-5344333,5344438-5344506,5344631-5344725,
           5345580-5345658,5346499-5346563,5347368-5347461,
           5347675-5347744,5348363-5349357
          Length = 931

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 537 EALLAYVWRPDCDL*LWQNCQRREPVVLDHPSFLPNYTQL 418
           E  L  V+ PD  +  W+ C RR   ++   S +P  +QL
Sbjct: 431 EGHLRIVFNPDLKIASWEFCARRHEELIPRRSIIPQVSQL 470


>11_01_0657 +
           5322295-5323367,5323436-5323555,5323743-5323791,
           5323968-5324084,5324200-5324268,5324394-5324488,
           5325183-5325521,5327043-5327084,5327814-5327907,
           5328121-5328190,5328719-5329677
          Length = 1008

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 537 EALLAYVWRPDCDL*LWQNCQRREPVVLDHPSFLPNYTQL 418
           E  L  V+ PD  +  W+ C RR   ++   S +P  +QL
Sbjct: 441 EGHLRIVFNPDLKIASWEFCARRHEELIPRRSIIPQVSQL 480


>03_04_0174 - 18044516-18046327
          Length = 603

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 479 ARGASQSSSITHLFFQITHNCTFRHSTHRHYIAN 378
           +RG++ S S  H     THN T+ H +H HY  N
Sbjct: 35  SRGSTSSPSSHH-----THNHTYYHHSHSHYNNN 63


>11_06_0377 - 22900042-22900452,22900527-22902236
          Length = 706

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +3

Query: 366 ATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRL-ARASGNFATVIGHNPDAKRTRVK 533
           A L+ G   P+G + E   VC L +   D  R+ A  +G    + G  PD +  RV+
Sbjct: 373 AALDDGEERPLGGLVEELFVCRLGD--DDEVRVGANHNGEGRRLRGPRPDGEEARVR 427


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,741,064
Number of Sequences: 37544
Number of extensions: 372714
Number of successful extensions: 865
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)